Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FGL10_RS00750 Genome accession   NZ_LR590477
Coordinates   130562..131368 (-) Length   268 a.a.
NCBI ID   WP_003707912.1    Uniprot ID   D0W7U7
Organism   Neisseria lactamica strain NCTC10617     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 125562..136368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL10_RS00735 (NCTC10617_00123) - 126192..126752 (+) 561 WP_232043753.1 uracil-DNA glycosylase family protein -
  FGL10_RS00740 (NCTC10617_00124) trpB 126936..128138 (+) 1203 WP_003707908.1 tryptophan synthase subunit beta -
  FGL10_RS00745 (NCTC10617_00125) comA 128270..130489 (+) 2220 WP_155270579.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FGL10_RS00750 (NCTC10617_00126) comL 130562..131368 (-) 807 WP_003707912.1 outer membrane protein assembly factor BamD Machinery gene
  FGL10_RS00755 (NCTC10617_00127) rluD 131367..132491 (+) 1125 WP_003707911.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FGL10_RS00760 (NCTC10617_00128) - 132644..133591 (-) 948 WP_002221255.1 bile acid:sodium symporter family protein -
  FGL10_RS00770 (NCTC10617_00129) pgeF 134035..134814 (+) 780 WP_003707918.1 peptidoglycan editing factor PgeF -
  FGL10_RS00775 (NCTC10617_00130) lptE 134866..135345 (+) 480 WP_003707920.1 LPS assembly lipoprotein LptE -
  FGL10_RS00780 (NCTC10617_00131) holA 135347..136345 (+) 999 WP_003707922.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30648.77 Da        Isoelectric Point: 8.6962

>NTDB_id=1126915 FGL10_RS00750 WP_003707912.1 130562..131368(-) (comL) [Neisseria lactamica strain NCTC10617]
MKKILLMVSLSLALCACASSQGTVDKDTQTTQGWGVEKLYAEAQDELGGGNYTRAVKLYEILGSRFPTGRYAQQALLDTA
YAYYKDDEKDKALAAIDRFRNLYPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVRRFPD
SKYAADASARMIKLVDALGGNEMAVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRR
VLETNFPKSPFLTHTWQPDDMPWWRYWH

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1126915 FGL10_RS00750 WP_003707912.1 130562..131368(-) (comL) [Neisseria lactamica strain NCTC10617]
ATGAAAAAAATTCTTTTAATGGTTTCGTTAAGTTTGGCACTGTGCGCCTGTGCAAGCAGCCAAGGCACGGTCGACAAAGA
TACCCAAACGACCCAAGGCTGGGGCGTGGAAAAACTCTATGCCGAAGCGCAAGACGAGTTGGGCGGCGGCAATTATACGC
GCGCCGTCAAATTATACGAAATATTGGGCTCGCGCTTCCCGACCGGCCGCTACGCGCAACAGGCGTTGCTGGATACGGCC
TACGCCTATTATAAAGACGACGAAAAAGACAAGGCGCTGGCGGCAATCGACCGCTTCCGCAACCTCTACCCGCAGCATCC
GAATATGGATTACGCGCTGTACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGC
AAGACTGGTCCGACCGCGATCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCGGCGTTTCCCCGAC
AGCAAATACGCCGCCGATGCGTCCGCGCGTATGATCAAACTGGTCGATGCCTTGGGCGGCAATGAAATGGCGGTTGCCCG
TTATTATATGAAACGCGGCGCATACATCGCCGCCGCCAACCGTGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGCT
ATGTCGAAGAATCGCTCGCCATCTTGGAACTCGCCTACCAAAAACTCGGCAAACCGCAGCTTGCCGCCGACACACGCCGC
GTGTTGGAAACCAATTTCCCGAAAAGCCCGTTTTTGACACACACTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTG
GCATTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(37-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0W7U7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

88.433

100

0.884
  comL Neisseria meningitidis MC58

88.06

100

0.881

Multiple sequence alignment