Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FGL10_RS00745 Genome accession   NZ_LR590477
Coordinates   128270..130489 (+) Length   739 a.a.
NCBI ID   WP_155270579.1    Uniprot ID   -
Organism   Neisseria lactamica strain NCTC10617     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 123270..135489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL10_RS00715 (NCTC10617_00120) - 123917..124372 (-) 456 WP_003707899.1 hypothetical protein -
  FGL10_RS00720 (NCTC10617_00121) - 124483..125052 (-) 570 WP_003707901.1 GTP pyrophosphokinase -
  FGL10_RS00725 (NCTC10617_00122) rsmA 125067..125846 (-) 780 WP_003707904.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  FGL10_RS00735 (NCTC10617_00123) - 126192..126752 (+) 561 WP_232043753.1 uracil-DNA glycosylase family protein -
  FGL10_RS00740 (NCTC10617_00124) trpB 126936..128138 (+) 1203 WP_003707908.1 tryptophan synthase subunit beta -
  FGL10_RS00745 (NCTC10617_00125) comA 128270..130489 (+) 2220 WP_155270579.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FGL10_RS00750 (NCTC10617_00126) comL 130562..131368 (-) 807 WP_003707912.1 outer membrane protein assembly factor BamD Machinery gene
  FGL10_RS00755 (NCTC10617_00127) rluD 131367..132491 (+) 1125 WP_003707911.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FGL10_RS00760 (NCTC10617_00128) - 132644..133591 (-) 948 WP_002221255.1 bile acid:sodium symporter family protein -
  FGL10_RS00770 (NCTC10617_00129) pgeF 134035..134814 (+) 780 WP_003707918.1 peptidoglycan editing factor PgeF -
  FGL10_RS00775 (NCTC10617_00130) lptE 134866..135345 (+) 480 WP_003707920.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 79884.55 Da        Isoelectric Point: 10.0903

>NTDB_id=1126914 FGL10_RS00745 WP_155270579.1 128270..130489(+) (comA) [Neisseria lactamica strain NCTC10617]
MFRRCFLPCWVVGAAASFALPVVPHWLFWLAAFAVFAVFARRFAFAGLMLCVLAGAAYGVFRTEAALSSQWRAEAVSGVP
LTVEVADMPRSDGRRVQFAAKAVDSGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGV
GTVGADRVLLHDGSGWGIAVWRSRISRNWQQADADGGLSDGIGLMRALSVGEQSALRPELWQAFRPLGLTHLVSISGLHV
TMVAVMFAWLAKRLLACSPRLPARPRVWVLAAGCAGALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLSAWATWWQALA
AVLLFDPLAVLGVGTWLSFGLVAALIWACSGRLHEGKRQTALRGQWAASVLSLVLLGYLFASLPLISPLVNAVAIPWFSW
VLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVASAPLPLLVLAVCAALLLLLPRGLGLRPWAVLLLAG
FVFYRPPGVPENEAAVTVWDAGQGLSVSVQTANHHLLFDTGTASAAQTGIVPSLNAAGVRRLDKLVLSHHDSDHDGGFQT
VGKIPNGGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLRPSERKNIDDNGKSCVLRVVAGGAALLVTGDLDTKGEESLVG
KYGGNLYSQVLVLGHHGSNTSSSGVFLNAVSPEYAVASSGYANAYKHPTEAVQNRVRAHGIKLLRTDLSGALQFGLGRGG
VKAQRLRGYKFYWQKKPFE

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1126914 FGL10_RS00745 WP_155270579.1 128270..130489(+) (comA) [Neisseria lactamica strain NCTC10617]
GTGTTCCGTCGTTGTTTTTTGCCGTGTTGGGTCGTCGGCGCGGCGGCTTCGTTTGCGCTGCCGGTCGTGCCGCATTGGCT
GTTTTGGCTGGCGGCTTTTGCGGTTTTTGCTGTGTTTGCAAGGCGGTTTGCGTTTGCCGGTTTGATGTTGTGTGTCTTGG
CAGGGGCTGCTTACGGTGTGTTCAGGACGGAGGCGGCACTGTCTTCGCAATGGCGGGCGGAGGCGGTTTCAGGCGTGCCG
TTGACGGTGGAAGTGGCGGATATGCCGAGGTCGGACGGGCGGCGCGTGCAGTTTGCGGCAAAGGCTGTGGACAGCGGTGG
TCGGACGTTCGATTTGCTGCTGTCGGACTACAAACGGCGCGAATGGGCGGTCGGGAGCAGATGGCGGATAACGGCACGTG
TGCACCCCGTCGTCGGGGAGTTGAACCTGCGCGGTTTGAACCGTGAGGCGTGGGCATTATCCAACGGGATAGGCGGCGTG
GGGACGGTCGGTGCGGACAGGGTTTTGCTGCATGACGGAAGCGGTTGGGGGATTGCGGTTTGGCGCAGCCGCATCAGCCG
TAATTGGCAGCAGGCGGATGCGGACGGCGGGCTTTCAGACGGCATCGGGCTGATGCGCGCGTTGAGTGTGGGCGAACAGT
CGGCATTGCGCCCCGAATTGTGGCAGGCGTTTCGACCGTTGGGGCTGACGCATCTGGTCAGTATTTCGGGTTTGCACGTT
ACGATGGTGGCGGTGATGTTTGCGTGGCTGGCGAAACGGCTGCTTGCCTGTTCCCCGCGCCTTCCCGCCCGGCCGCGCGT
GTGGGTTTTGGCGGCGGGGTGTGCAGGCGCGCTGTTTTACGCGCTGCTTGCCGGTTTTTCTGTGCCGACGCAGCGCAGTG
TTTTGATGTTGGCGGCGTTTGCGTGGGCGTGGCGCAGGGGAAGATTGTCGGCGTGGGCGACGTGGTGGCAGGCGTTGGCG
GCGGTGCTGCTGTTCGACCCTTTGGCGGTCTTGGGAGTGGGGACTTGGCTGTCTTTCGGTTTGGTGGCGGCCCTGATATG
GGCGTGTTCGGGGCGTTTGCACGAGGGGAAACGGCAAACTGCTTTGCGCGGGCAGTGGGCGGCTTCGGTGTTGTCGCTGG
TTTTGCTCGGTTATCTGTTTGCTTCGCTGCCTTTAATCAGCCCTTTGGTCAATGCGGTGGCGATTCCGTGGTTTTCTTGG
GTATTGACGCCGCTGGCGTTGCTGGGTTCGGTCGTGCCGTTTGCGCCTTTGCAACAGTTGGGGGCATTTTTGGCGGAATA
CACTTTGCGGTTTTTGGTGTGGCTTGCCGATGTGTCGCCCGAGTTTGCCGTTGCCTCCGCACCTTTGCCGCTGCTGGTGT
TGGCGGTGTGTGCCGCTTTGCTGTTGTTGCTGCCGCGCGGCTTGGGTTTGCGTCCGTGGGCGGTGTTGCTGTTGGCAGGG
TTTGTGTTTTACCGTCCGCCCGGCGTGCCGGAAAATGAGGCTGCGGTTACGGTTTGGGATGCGGGGCAGGGTTTGTCGGT
GTCGGTTCAGACGGCAAATCATCATCTTTTGTTTGACACCGGAACTGCATCGGCGGCACAGACGGGGATTGTGCCGAGTT
TGAATGCGGCGGGTGTCCGCCGTTTGGACAAGCTGGTTCTGTCGCATCACGACAGTGACCACGACGGCGGTTTTCAGACA
GTCGGCAAGATACCGAACGGCGGGATTTATGCCGGACAGCCGGAATTTTATGAGGGGGCGCGGCATTGTGCGGAACAGCG
TTGGCAATGGGACGGCGTAGATTTCGAGTTTTTGAGGCCGTCTGAACGCAAAAACATCGATGATAATGGGAAAAGTTGTG
TTTTGCGTGTTGTGGCTGGTGGTGCGGCACTGCTGGTAACGGGCGATTTGGATACGAAGGGCGAGGAAAGCCTGGTCGGC
AAGTATGGAGGCAACCTGTACAGCCAGGTGTTGGTGTTGGGGCATCACGGCAGCAATACGTCCTCGTCGGGCGTGTTCCT
CAATGCCGTCTCGCCCGAATATGCCGTTGCTTCAAGCGGTTATGCCAACGCCTACAAACATCCGACCGAAGCGGTGCAAA
ACCGTGTTCGCGCACACGGTATCAAGTTGTTGCGTACCGATTTGTCTGGCGCGCTGCAATTCGGCTTGGGGCGCGGCGGC
GTGAAGGCCCAACGTTTGAGAGGGTATAAATTCTATTGGCAGAAAAAACCGTTTGAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-677)

Domain of unknown function (DUF4131) (DUF4131)

(7-167)

Competence protein (Competence)

(208-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

95.805

100

0.958

Multiple sequence alignment