Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGK81_RS01765 Genome accession   NZ_LR590466
Coordinates   357879..358370 (+) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus pyogenes strain NCTC8193     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 352879..363370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK81_RS01735 (NCTC8193_00341) - 354068..354568 (+) 501 WP_011018191.1 phosphatase PAP2 family protein -
  FGK81_RS01740 (NCTC8193_00342) trxA 354631..354963 (+) 333 WP_256363924.1 thioredoxin -
  FGK81_RS01745 (NCTC8193_00343) - 355015..355602 (-) 588 WP_011018189.1 helix-turn-helix domain-containing protein -
  FGK81_RS01750 (NCTC8193_00344) mutY 355779..356933 (-) 1155 WP_023077315.1 A/G-specific adenine glycosylase -
  FGK81_RS01755 (NCTC8193_00345) - 357101..357394 (+) 294 WP_002983113.1 hypothetical protein -
  FGK81_RS01760 (NCTC8193_00346) rpsF 357567..357857 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  FGK81_RS01765 (NCTC8193_00347) ssbA 357879..358370 (+) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  FGK81_RS01770 (NCTC8193_00348) rpsR 358535..358774 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  FGK81_RS01775 (NCTC8193_00349) - 358905..359561 (-) 657 WP_002983144.1 DUF1129 domain-containing protein -
  FGK81_RS01780 (NCTC8193_00350) - 359694..360638 (-) 945 WP_011888617.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=1126769 FGK81_RS01765 WP_002993238.1 357879..358370(+) (ssbA) [Streptococcus pyogenes strain NCTC8193]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1126769 FGK81_RS01765 WP_002993238.1 357879..358370(+) (ssbA) [Streptococcus pyogenes strain NCTC8193]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment