Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OU5_RS21685 Genome accession   NZ_CP005960
Coordinates   4861588..4863177 (-) Length   529 a.a.
NCBI ID   WP_010467553.1    Uniprot ID   -
Organism   Pseudomonas mandelii JR-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4856588..4868177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU5_RS21670 (OU5_4344) - 4858556..4858957 (+) 402 WP_010467550.1 type IV pilin protein -
  OU5_RS21675 (OU5_4345) thiO 4859015..4860115 (+) 1101 WP_010467551.1 glycine oxidase ThiO -
  OU5_RS21680 (OU5_4346) pilR 4860245..4861585 (-) 1341 WP_010467552.1 sigma-54-dependent transcriptional regulator Regulator
  OU5_RS21685 (OU5_4347) pilS 4861588..4863177 (-) 1590 WP_010467553.1 sensor histidine kinase Regulator
  OU5_RS21690 (OU5_4348) - 4863167..4863400 (-) 234 WP_010467554.1 PP0621 family protein -
  OU5_RS21695 (OU5_4349) - 4863514..4864536 (-) 1023 WP_010467556.1 outer membrane protein assembly factor BamD -
  OU5_RS21700 (OU5_4350) rluD 4864688..4865650 (+) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OU5_RS21705 (OU5_4351) pgeF 4865647..4866366 (+) 720 WP_010467559.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58469.28 Da        Isoelectric Point: 6.9037

>NTDB_id=112647 OU5_RS21685 WP_010467553.1 4861588..4863177(-) (pilS) [Pseudomonas mandelii JR-1]
MVAETSTPGGKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLAFAQDDLLRSGSWLYLVLNILLVVFWQNTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVAALGIVGLGFLLSFSHPISPGEYLQVGTLG
ALCFAAALLVQGLIRRLEVSENLAEQRASEVLGLEALNALILHRMRTGILVLDDQRRVRLANQSALTLLGQNDLDGQLID
DYSPALVERLQLWFNNPSLRPQSLKIASSGIELQPSFIALDQSPNHHTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGATDR
QLIHLHIGPGDFKTLMDPNQLTQILDNLLRNAWRHSALNHDLAQAWLELFVEPDSQLPTLEVRDNGPGVAPDQQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=112647 OU5_RS21685 WP_010467553.1 4861588..4863177(-) (pilS) [Pseudomonas mandelii JR-1]
GTGGTCGCTGAGACGTCCACTCCCGGCGGCAAACAGGCACAGCGACTGCTGCGTCTTTACCATCTCTACCGTTTAAGCGT
CGGCATCACCCTCGTACTGTTGATTTCCAGCAACATGGACAACCAGCTGCTGGCCTTCGCCCAGGATGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTCTTTTGGCAGAACACCCGACGGCCGGCACAGCTTTTC
AGCCTCGCATTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCGGGCGGTGTGGCCAGCGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCAGCAACACCCTGTTGCGCGGACGTATCGGCTTGTTGATCGCGGCGGTCGCCGCCCTTG
GCATCGTCGGCCTTGGCTTCCTCCTGAGTTTCAGTCACCCGATCAGTCCCGGCGAGTACCTGCAAGTCGGCACTCTCGGC
GCGCTGTGTTTTGCCGCGGCGTTGCTCGTGCAAGGTCTGATCAGGCGACTGGAAGTCAGCGAAAACCTCGCCGAACAGCG
AGCCAGTGAAGTGCTTGGCCTGGAAGCGCTCAATGCGCTGATCCTGCACCGCATGCGCACGGGTATTCTGGTGCTGGACG
ACCAGCGGCGGGTGCGACTGGCCAATCAAAGCGCCTTGACCTTACTGGGGCAGAACGACCTCGATGGTCAGTTGATCGAC
GACTATTCGCCGGCCTTGGTCGAACGCCTTCAGCTGTGGTTCAACAATCCATCGCTGCGACCGCAAAGCCTGAAAATCGC
CAGCAGCGGCATAGAACTGCAACCCAGCTTCATTGCGTTGGACCAAAGCCCGAACCACCACACCCTGGTATTTCTGGAGG
ACCTCGCCCAGATCGCTCAACAAGCGCAGCAACTGAAGCTCGCCGCACTCGGGCGCCTGACGGCGGGTATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCGTTAGTCATGCCGCGCAGCTATTGCAGGAATCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAAC
AAACCGTACCGCAACGGCTCGATCTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGTGAAGGCGCGACCGATCGC
CAGTTGATTCACCTGCACATCGGCCCGGGCGACTTCAAAACCCTGATGGACCCGAATCAGCTGACTCAGATTCTCGACAA
TCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTGAATCACGACCTGGCGCAGGCCTGGCTCGAGTTGTTTGTCGAGCCCG
ACAGCCAGTTGCCGACGCTCGAAGTCCGGGACAACGGCCCCGGCGTGGCGCCGGACCAACAGACGCATTTGTTCGAACCG
TTCTTCACCACCAGTAGCCAGGGCACAGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

PAS domain (PAS_8)

(201-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605

Multiple sequence alignment