Detailed information NTG0112646

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: OU5_RS21680
• Genome accession: NZ_CP005960
• Coordinates: 4860245..4861585 (-)
• Length: 446 a.a.
• NCBI ID: WP_010467552.1
• Uniprot ID: A0A024EFS0
• Organism: Pseudomonas mandelii JR-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4855245..4866585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OU5_RS21665 (OU5_4343)	-	4855431..4858541 (+)	3111	WP_010467549.1	pilus assembly protein	-
OU5_RS21670 (OU5_4344)	-	4858556..4858957 (+)	402	WP_010467550.1	type IV pilin protein	-
OU5_RS21675 (OU5_4345)	thiO	4859015..4860115 (+)	1101	WP_010467551.1	glycine oxidase ThiO	-
OU5_RS21680 (OU5_4346)	pilR	4860245..4861585 (-)	1341	WP_010467552.1	sigma-54-dependent transcriptional regulator	Regulator
OU5_RS21685 (OU5_4347)	pilS	4861588..4863177 (-)	1590	WP_010467553.1	sensor histidine kinase	Regulator
OU5_RS21690 (OU5_4348)	-	4863167..4863400 (-)	234	WP_010467554.1	PP0621 family protein	-
OU5_RS21695 (OU5_4349)	-	4863514..4864536 (-)	1023	WP_010467556.1	outer membrane protein assembly factor BamD	-
OU5_RS21700 (OU5_4350)	rluD	4864688..4865650 (+)	963	WP_007942311.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
OU5_RS21705 (OU5_4351)	pgeF	4865647..4866366 (+)	720	WP_010467559.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49813.28 Da
• Isoelectric Point: 6.4102

>NTDB_id=112646 OU5_RS21680 WP_010467552.1 4860245..4861585(-) (pilR) [Pseudomonas mandelii JR-1]
MSPRPKVLIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLMRETFDLCLTDMRLPDGTGLELVQYIQQRYPHVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTAIDRRLLGDSLPMRNLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQQEMVVDVRILCATHKDLDAEVTAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASH
VLKRLAAGSGQPAAKLHPLALDALKSYRFPGNVRELENVLERAYTLCEDKQIEASDLRLAEGNCTAESGVPDLTQIDNLE
DYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=112646 OU5_RS21680 WP_010467552.1 4860245..4861585(-) (pilR) [Pseudomonas mandelii JR-1]
ATGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTACTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTACAGTGCCCGCAACCTTGGCGAAGCCCAGGCCTTGTTGATGCGCGAGACATTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGCCTTGAGTTGGTGCAGTACATCCAGCAGCGTTACCCACACGTGCCGGTGGCG
ATGATCACCGCTTACGGCAGCCTCGAAACAGCGATCAACGCCCTCAAGGCAGGGGCTTTCGACTTCCTGACCAAGCCGGT
TGACCTGACGCGCCTGCGCGAACTGGTCACCAGCGCCCTGCGCTTGCCGGCACCGGGTGGCGCCAGTACCGCCATCGATC
GCCGGTTGCTGGGCGATTCACTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTCGCACGCAGTCAGGCCCCGGTG
TACATCAGCGGCGAATCCGGCAGTGGCAAGGAATTGGTCGCCCGACTGATCCACGAGCAGGGCCCGCGGGCTAATCAACC
GTTCGTCCCGGTCAATTGCGGGGCAATTCCGTCAGAGTTGATGGAGAGTGAATTCTTCGGCCATCGCAAAGGCAGTTTCA
GCGGCGCCATCGAAGACAAACCAGGGCTGTTCCAGGCCGCCCACGGCGGCACACTGTTTCTCGACGAAGTGGCCGATCTG
CCCTTGGCGATGCAGGTCAAACTGCTCCGAGCCATTCAGGAGAAAGCCATTCGCAGTGTCGGCGGTCAGCAAGAAATGGT
GGTTGATGTCCGCATCCTTTGTGCCACCCACAAAGACCTCGATGCCGAAGTCACCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATCGAACTGCGCGTCCCCCCTTTGCGCGAGCGCCGCGACGACATCGAACCGCTGGCCAGCCAT
GTGCTCAAGCGCCTGGCGGCCGGCAGCGGTCAACCCGCCGCAAAACTCCATCCACTCGCCCTGGATGCACTGAAAAGTTA
CCGTTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTGGAGCGGGCTTACACCCTGTGCGAGGACAAACAGATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGTAACTGCACGGCAGAGAGCGGCGTGCCGGACCTGACGCAAATCGATAACCTGGAA
GATTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCACTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTTTCATTCAGATCGATGCGATATCGGCTCAAGAAATTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

3D structure

• AlphaFold DB: A0A024EFS0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	99.327	0.789
pilR	Acinetobacter baumannii strain A118	49.46	100	0.513