Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   E0F39_RS08055 Genome accession   NZ_LR216060
Coordinates   1496983..1498944 (-) Length   653 a.a.
NCBI ID   WP_000748892.1    Uniprot ID   A0A0E8T7K5
Organism   Streptococcus pneumoniae strain GPSC47 substr. ST315     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491983..1503944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F39_RS08040 (SAMEA3713867_01526) - 1492405..1493571 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  E0F39_RS08045 (SAMEA3713867_01527) - 1493579..1494673 (-) 1095 WP_130886886.1 cystathionine gamma-synthase -
  E0F39_RS12850 (SAMEA3713867_01528) - 1494830..1495552 (-) 723 WP_001864981.1 ABC transporter ATP-binding protein -
  E0F39_RS12855 (SAMEA3713867_01529) - 1495625..1496512 (-) 888 WP_001864980.1 ABC transporter ATP-binding protein -
  E0F39_RS13070 - 1496654..1496788 (-) 135 WP_269472060.1 hypothetical protein -
  E0F39_RS08055 (SAMEA3713867_01530) amiA3 1496983..1498944 (-) 1962 WP_000748892.1 peptide ABC transporter substrate-binding protein Regulator
  E0F39_RS08065 (SAMEA3713867_01531) - 1499148..1500770 (-) 1623 WP_001864774.1 polysaccharide biosynthesis protein -
  E0F39_RS08070 (SAMEA3713867_01532) - 1500876..1502321 (+) 1446 WP_050198894.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  E0F39_RS08075 (SAMEA3713867_01533) - 1502367..1502561 (-) 195 WP_000051201.1 CsbD family protein -
  E0F39_RS08080 (SAMEA3713867_01534) - 1502662..1503311 (-) 650 Protein_1550 DUF1803 domain-containing protein -
  E0F39_RS08085 (SAMEA3713867_01535) - 1503295..1503807 (-) 513 WP_000892255.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72977.31 Da        Isoelectric Point: 4.7684

>NTDB_id=1126192 E0F39_RS08055 WP_000748892.1 1496983..1498944(-) (amiA3) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
MKKSKSKYLTLAGLVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGI
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDATSYYWNFNLDRQAYKFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYDRTSYGAQTQGEDGATKILRNLVVPPTFVSIKGKDFGEVVASKMVNNYGKEWQGIN
FADGQDPYYNPEKAKAKFAEAKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYD
NSSYLAQTAIQKDYDLYNGGWSPDYLDPSTYLDIFSVKNGGVLQNLGLDPGEANDKAKAVGLDTYTQMLEEANKEQDPAK
RYEKYADIQAWLIDSSLAIPNVSLGGTPSLRKTVPFSAPYSLAGNKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEES
NKKAQEELAKHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1126192 E0F39_RS08055 WP_000748892.1 1496983..1498944(-) (amiA3) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTCTTGTCCTGGGTACAGGAGTTTTATTGAGCGCGTGTGGAAA
TTCTAGCACGGCGTCAAAAACCTACAACTATGTTTATTCAAGTGATCCATCTAGCTTGAACTATCTAGCAGAAAACCGCG
CAACAACCAATGATATTGTGACCAATCTGGTAGATGGTCTCATGGAAAATGACCAATATGGGAACTATGTGCCATCCTTG
GCAGAAGATTGGACTGTTTCTCAGGATGGTTTGACCTATACCTACAAACTTCGTAAGGATGCCAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCCCAGGATTTTGTGACAGGATTGCAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTGGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGTATC
AAGGCTCTTGATGATCAAACCGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGCAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGACGATGTGAAATTGACCTACTATGATGGTAGTGACCAAGATGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTATGCCCGTCTCTATCCGAATAGTTCAAGTTTTGAAGGGATTAAAGAAAAATACAAAGATGATATCATCT
ACAGTATGCAGGATGCTACGTCTTATTACTGGAATTTTAACCTAGATAGACAAGCTTATAAATTTACTTCTAAGACGACC
GACATTGAAAAGAAATCAACTCAGGAAGCAGTTCTTAATAAAAACTTCCGTCAAGCCATTAACTTTGCCTATGATCGTAC
CTCCTATGGGGCTCAAACTCAGGGAGAAGACGGAGCGACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAACCTTTGTAA
GTATCAAAGGAAAAGATTTTGGTGAAGTAGTAGCCTCTAAGATGGTCAATAATTATGGTAAGGAATGGCAAGGCATCAAC
TTTGCGGATGGTCAAGACCCTTACTACAATCCTGAGAAAGCCAAGGCTAAATTTGCTGAGGCCAAGAAAGAGCTAGAAGC
TAAGGGAGTTCAATTCCCTATTCATTTGGATGCGACAGTTGACCAAGCTTCTAAGAAGGGGATTCAAGAAGTAAGCTCTA
TGAAGCAATCTATTGAAGCAGCTTTAGGTACGGAGAACGTCGTTATTGATATCCAACAGTTATCAACAGAGGACTATGAT
AACTCAAGTTACCTTGCTCAGACTGCTATTCAGAAAGACTACGACCTTTACAATGGTGGTTGGAGTCCTGACTACTTAGA
TCCATCAACCTATCTTGATATCTTTAGTGTCAAGAATGGTGGGGTTCTACAAAATCTTGGACTCGACCCTGGTGAAGCCA
ATGACAAGGCTAAGGCAGTTGGACTTGACACTTATACTCAAATGTTGGAAGAGGCTAATAAGGAGCAAGACCCAGCCAAA
CGTTATGAGAAATATGCTGATATTCAAGCATGGTTGATAGATAGTTCTCTAGCGATTCCAAATGTTTCATTAGGTGGAAC
GCCTAGCTTGAGAAAAACAGTTCCTTTCTCAGCACCTTATTCATTGGCTGGTAATAAAGGGGTTGAATCATATAAATACC
TCAAAGTACAAGATAAGATTGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCC
AATAAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E8T7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.601

100

0.571
  amiA3 Streptococcus thermophilus LMD-9

56.601

100

0.571
  amiA Streptococcus salivarius strain HSISS4

56.773

100

0.571

Multiple sequence alignment