Detailed information NTG1125814

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ALT761_RS15465
• Genome accession: NZ_LR136958
• Coordinates: 3586793..3587698 (+)
• Length: 301 a.a.
• NCBI ID: WP_129739865.1
• Uniprot ID: A0A3S5CBJ9
• Organism: Alteromonas sp. 76-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3581793..3592698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ALT761_RS15440 (ALT761_03152)	ampD	3582166..3582726 (-)	561	WP_129739860.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ALT761_RS15445 (ALT761_03153)	-	3583229..3583759 (+)	531	WP_129739861.1	TIGR02281 family clan AA aspartic protease	-
ALT761_RS15450 (ALT761_03154)	nadC	3583778..3584632 (+)	855	WP_129739862.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ALT761_RS15455 (ALT761_03155)	-	3584996..3585415 (+)	420	WP_129739863.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ALT761_RS15460 (ALT761_03156)	pilC	3585482..3586690 (+)	1209	WP_129739864.1	type II secretion system F family protein	Machinery gene
ALT761_RS15465 (ALT761_03157)	pilD	3586793..3587698 (+)	906	WP_129739865.1	A24 family peptidase	Machinery gene
ALT761_RS15470 (ALT761_03158)	coaE	3587698..3588372 (+)	675	WP_232043474.1	dephospho-CoA kinase	-
ALT761_RS15475 (ALT761_03159)	zapD	3588501..3589253 (+)	753	WP_126873773.1	cell division protein ZapD	-
ALT761_RS15480 (ALT761_03160)	yacG	3589295..3589522 (+)	228	WP_129739866.1	DNA gyrase inhibitor YacG	-
ALT761_RS15485 (ALT761_03161)	-	3589533..3590411 (+)	879	WP_129739867.1	aspartoacylase	-
ALT761_RS15490 (ALT761_03162)	mutT	3590538..3590933 (-)	396	WP_129739868.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 301 a.a.
• Molecular weight: 33624.75 Da
• Isoelectric Point: 5.6907

>NTDB_id=1125814 ALT761_RS15465 WP_129739865.1 3586793..3587698(+) (pilD) [Alteromonas sp. 76-1]
MEAILLTSQLYPWLFYLFVFVVSLMVGSFLNVVIHRLPIMMENSWKQEYASYFIETDSENEDIQAAGEQTSSETFNLAKP
DSTCPSCGHKIRAWENIPIISYLFLRGKCSNCKTPISIRYPLVELFTALTCTFAAYYFGPTPQAIWAVIFTYILIALIFI
DLDKMLLPDQLTLPLLWLGLILSTQSIFVGPVDAIIGAAAGYLSLWSVFWLFKLVTGKEGMGYGDFKILAALGAFTGWQG
LPIIILLSSIVGAIAGIAIMMFQNKGKSLAIPFGPYLAVAGWITLFYKDTIITHYLKWALQ

Nucleotide

• Length: 906 bp

>NTDB_id=1125814 ALT761_RS15465 WP_129739865.1 3586793..3587698(+) (pilD) [Alteromonas sp. 76-1]
ATGGAAGCGATATTGCTTACCAGCCAATTATACCCGTGGTTATTCTACCTATTTGTTTTTGTGGTTAGCTTAATGGTAGG
AAGCTTCTTAAATGTAGTTATTCATCGCTTGCCCATTATGATGGAAAACAGTTGGAAGCAGGAATACGCCAGTTACTTTA
TTGAAACAGATAGCGAAAATGAAGATATTCAAGCTGCTGGTGAGCAAACTTCCTCTGAAACGTTTAATTTAGCTAAGCCA
GATAGCACTTGCCCAAGTTGCGGTCATAAAATTCGGGCTTGGGAAAATATTCCTATTATTAGCTATCTTTTCCTTCGCGG
GAAATGTTCAAACTGTAAAACCCCTATTTCTATTCGCTACCCATTGGTAGAACTATTTACAGCGCTAACTTGTACATTCG
CCGCCTATTATTTTGGCCCTACACCTCAAGCAATATGGGCAGTGATCTTTACTTATATTCTTATCGCTCTAATTTTTATC
GATTTAGATAAAATGCTGCTTCCAGACCAACTTACCCTTCCCTTACTGTGGCTTGGTTTAATACTTAGCACCCAATCTAT
TTTTGTTGGACCAGTTGACGCCATTATTGGTGCAGCCGCCGGATATTTGAGTTTATGGTCTGTGTTCTGGTTGTTTAAAT
TAGTCACCGGCAAAGAAGGTATGGGATATGGCGACTTTAAAATATTAGCAGCTCTTGGTGCCTTTACTGGCTGGCAGGGC
TTACCTATCATTATTTTATTGTCTTCAATAGTCGGTGCAATCGCCGGCATTGCCATAATGATGTTCCAAAACAAAGGAAA
ATCACTGGCTATCCCCTTCGGGCCCTATTTGGCTGTAGCAGGTTGGATAACCTTATTTTATAAAGATACGATTATTACCC
ACTATTTAAAATGGGCACTGCAGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (149-257)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-138)

3D structure

• AlphaFold DB: A0A3S5CBJ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	55.172	96.346	0.532
pilD	Vibrio cholerae strain A1552	53.819	95.681	0.515
pilD	Acinetobacter nosocomialis M2	49.645	93.688	0.465
pilD	Acinetobacter baumannii D1279779	49.645	93.688	0.465
pilD	Neisseria gonorrhoeae MS11	49.077	90.033	0.442