Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EQB52_RS03465 Genome accession   NZ_LR135475
Coordinates   674225..674737 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium isolate E8423     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 669225..679737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB52_RS03445 dnaB 669748..671115 (-) 1368 WP_002288373.1 replicative DNA helicase -
  EQB52_RS03450 rplI 671389..671841 (-) 453 WP_002288372.1 50S ribosomal protein L9 -
  EQB52_RS03455 - 671847..673820 (-) 1974 WP_002288371.1 DHH family phosphoesterase -
  EQB52_RS03460 rpsR 673963..674199 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  EQB52_RS03465 ssb 674225..674737 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  EQB52_RS03470 rpsF 674787..675086 (-) 300 WP_002288366.1 30S ribosomal protein S6 -
  EQB52_RS03475 gyrA 675322..677793 (-) 2472 WP_002303991.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=1125658 EQB52_RS03465 WP_002288368.1 674225..674737(-) (ssb) [Enterococcus faecium isolate E8423]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1125658 EQB52_RS03465 WP_002288368.1 674225..674737(-) (ssb) [Enterococcus faecium isolate E8423]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment