Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FSA55_RS10365 Genome accession   NZ_LR135443
Coordinates   2092749..2093261 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium isolate E7114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2087749..2098261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA55_RS10355 gyrA 2089693..2092164 (+) 2472 WP_002321575.1 DNA gyrase subunit A -
  FSA55_RS10360 rpsF 2092400..2092699 (+) 300 WP_002288366.1 30S ribosomal protein S6 -
  FSA55_RS10365 ssb 2092749..2093261 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  FSA55_RS10370 rpsR 2093287..2093523 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  FSA55_RS10375 - 2093666..2095639 (+) 1974 WP_002288371.1 DHH family phosphoesterase -
  FSA55_RS10380 rplI 2095645..2096097 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  FSA55_RS10385 dnaB 2096371..2097738 (+) 1368 WP_002288373.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=1125609 FSA55_RS10365 WP_002288368.1 2092749..2093261(+) (ssb) [Enterococcus faecium isolate E7114]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1125609 FSA55_RS10365 WP_002288368.1 2092749..2093261(+) (ssb) [Enterococcus faecium isolate E7114]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment