Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EQB69_RS00040 Genome accession   NZ_LR135293
Coordinates   9264..9776 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium isolate E7237     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1533..18216 9264..9776 within 0


Gene organization within MGE regions


Location: 1533..18216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB69_RS00010 dnaN 1533..2663 (+) 1131 WP_002288361.1 DNA polymerase III subunit beta -
  EQB69_RS00015 yaaA 2892..3134 (+) 243 WP_002295251.1 S4 domain-containing protein YaaA -
  EQB69_RS00020 recF 3121..4245 (+) 1125 WP_002301794.1 DNA replication/repair protein RecF -
  EQB69_RS00025 gyrB 4242..6188 (+) 1947 WP_002288364.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EQB69_RS00030 gyrA 6208..8679 (+) 2472 WP_002303991.1 DNA gyrase subunit A -
  EQB69_RS00035 rpsF 8915..9214 (+) 300 WP_002288366.1 30S ribosomal protein S6 -
  EQB69_RS00040 ssb 9264..9776 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  EQB69_RS00045 rpsR 9802..10038 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  EQB69_RS00050 - 10181..10654 (+) 474 Protein_9 phosphoesterase -
  EQB69_RS00055 tnpA 10803..11207 (+) 405 WP_002287522.1 IS200/IS605-like element ISEfa4 family transposase -
  EQB69_RS00060 tnpB 11224..12372 (+) 1149 WP_002287525.1 IS200/IS605 family element RNA-guided endonuclease TnpB -
  EQB69_RS00065 - 12528..14045 (+) 1518 Protein_12 DHH family phosphoesterase -
  EQB69_RS00070 rplI 14051..14503 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  EQB69_RS00075 dnaB 14777..16144 (+) 1368 WP_002288373.1 replicative DNA helicase -
  EQB69_RS00080 - 16924..18216 (+) 1293 WP_002288375.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=1124810 EQB69_RS00040 WP_002288368.1 9264..9776(+) (ssb) [Enterococcus faecium isolate E7237]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1124810 EQB69_RS00040 WP_002288368.1 9264..9776(+) (ssb) [Enterococcus faecium isolate E7237]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment