Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   YBT1520_RS20160 Genome accession   NZ_CP004858
Coordinates   3930394..3931173 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar kurstaki str. YBT-1520     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3925394..3936173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1520_RS20135 (YBT1520_20300) uppS 3926142..3926918 (-) 777 WP_000971296.1 isoprenyl transferase -
  YBT1520_RS20140 (YBT1520_20305) frr 3927004..3927561 (-) 558 WP_000531501.1 ribosome recycling factor -
  YBT1520_RS20145 (YBT1520_20310) pyrH 3927564..3928286 (-) 723 WP_000042668.1 UMP kinase -
  YBT1520_RS20150 (YBT1520_20315) tsf 3928353..3929240 (-) 888 WP_001018578.1 translation elongation factor Ts -
  YBT1520_RS20155 (YBT1520_20320) rpsB 3929344..3930045 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  YBT1520_RS20160 (YBT1520_20325) codY 3930394..3931173 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  YBT1520_RS20165 hslU 3931251..3932641 (-) 1391 Protein_3934 ATP-dependent protease ATPase subunit HslU -
  YBT1520_RS20170 (YBT1520_20340) hslV 3932664..3933206 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  YBT1520_RS20175 (YBT1520_20345) xerC 3933249..3934148 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  YBT1520_RS20180 (YBT1520_20350) trmFO 3934214..3935518 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=112437 YBT1520_RS20160 WP_000421290.1 3930394..3931173(-) (codY) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=112437 YBT1520_RS20160 WP_000421290.1 3930394..3931173(-) (codY) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment