Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   YBT1520_RS21070 Genome accession   NZ_CP004858
Coordinates   4108804..4109238 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus thuringiensis serovar kurstaki str. YBT-1520     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4103804..4114238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1520_RS21050 (YBT1520_21250) - 4104982..4105539 (+) 558 WP_000062063.1 PadR family transcriptional regulator -
  YBT1520_RS21060 (YBT1520_21255) metE 4106051..4108339 (+) 2289 WP_038413699.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  YBT1520_RS21065 (YBT1520_21260) comJ 4108378..4108767 (-) 390 WP_000424030.1 competence protein ComJ -
  YBT1520_RS21070 (YBT1520_21265) nucA/comI 4108804..4109238 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  YBT1520_RS21075 (YBT1520_21270) - 4109465..4110214 (+) 750 WP_000388472.1 DUF3967 domain-containing protein -
  YBT1520_RS21080 (YBT1520_21275) kinB 4110253..4111527 (-) 1275 WP_000420369.1 sporulation sensor histidine kinase KinB -
  YBT1520_RS21085 (YBT1520_21280) - 4111838..4112038 (+) 201 WP_000929277.1 hypothetical protein -
  YBT1520_RS21090 (YBT1520_21285) - 4112161..4113324 (+) 1164 WP_000434578.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=112439 YBT1520_RS21070 WP_000811494.1 4108804..4109238(-) (nucA/comI) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=112439 YBT1520_RS21070 WP_000811494.1 4108804..4109238(-) (nucA/comI) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGTGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549

Multiple sequence alignment