Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   EL323_RS06315 Genome accession   NZ_LR134526
Coordinates   1090449..1091069 (-) Length   206 a.a.
NCBI ID   WP_002253554.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10026     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1085449..1096069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL323_RS06300 (NCTC10026_01050) pilX 1088449..1088922 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  EL323_RS06305 (NCTC10026_01051) pilK 1088927..1089520 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL323_RS06310 (NCTC10026_01052) pilJ 1089499..1090452 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  EL323_RS06315 (NCTC10026_01053) pilV 1090449..1091069 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  EL323_RS06320 (NCTC10026_01054) pilH 1091099..1091767 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL323_RS06330 (NCTC10026_01055) dnaB 1092069..1093475 (-) 1407 WP_002219448.1 replicative DNA helicase -
  EL323_RS06340 (NCTC10026_01056) - 1093638..1094225 (+) 588 WP_002246908.1 superoxide dismutase -

Sequence


Protein


Download         Length: 206 a.a.        Molecular weight: 22375.31 Da        Isoelectric Point: 4.9853

>NTDB_id=1123972 EL323_RS06315 WP_002253554.1 1090449..1091069(-) (pilV) [Neisseria meningitidis strain NCTC10026]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNNTLSHTLSAVDGEFAIDAIKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTFSGNAFSSNCDN
KANGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1123972 EL323_RS06315 WP_002253554.1 1090449..1091069(-) (pilV) [Neisseria meningitidis strain NCTC10026]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAACCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACAATACACTATCGCATACACTATCAGCTGTGGATGGTGAGTTTGCGATTGATGCCATAAA
AACTAAGACACAGTTGGCAGAGGCACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCA
TCCATTACGCCGTCTGCAAGGATTCGTCGGGTAACGCGCCGACATTCTCCGGCAATGCTTTTTCTTCAAATTGCGACAAT
AAGGCAAACGGGGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCT
TGAGGTGAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

96.602

100

0.966

  pilI Neisseria gonorrhoeae MS11

83.495

100

0.835

  pilV Neisseria gonorrhoeae MS11

83.495

100

0.835


Multiple sequence alignment