Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EL297_RS11140 Genome accession   NZ_LR134525
Coordinates   1876820..1877158 (+) Length   112 a.a.
NCBI ID   WP_082308656.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10025     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1871820..1882158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL297_RS11115 (NCTC10025_01865) metG 1872558..1874612 (+) 2055 WP_082308719.1 methionine--tRNA ligase -
  EL297_RS11120 (NCTC10025_01866) - 1874689..1875642 (-) 954 WP_082308654.1 D-2-hydroxyacid dehydrogenase -
  EL297_RS11125 (NCTC10025_01867) - 1875764..1875982 (+) 219 WP_002228831.1 DUF2061 domain-containing protein -
  EL297_RS11130 (NCTC10025_01868) - 1876060..1876389 (+) 330 WP_002216146.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  EL297_RS13790 - 1876418..1876627 (+) 210 Protein_1838 pilin -
  EL297_RS11140 (NCTC10025_01870) pilE 1876820..1877158 (+) 339 WP_082308656.1 pilin Machinery gene
  EL297_RS11145 (NCTC10025_01871) - 1877151..1877467 (+) 317 Protein_1840 pilin -
  EL297_RS11165 (NCTC10025_01872) lpxC 1878492..1879415 (+) 924 WP_002246555.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EL297_RS11175 (NCTC10025_01873) gnd 1880598..1882046 (+) 1449 WP_002247197.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 11956.25 Da        Isoelectric Point: 9.6561

>NTDB_id=1123945 EL297_RS11140 WP_082308656.1 1876820..1877158(+) (pilE) [Neisseria meningitidis strain NCTC10025]
MTGFNDAAGVASSPSDIKGKYVQKVEVAKGVITAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVQRDKADADADA
ITADTAANKKIDTNHSHEPTSRHSRESGNDGI

Nucleotide


Download         Length: 339 bp        

>NTDB_id=1123945 EL297_RS11140 WP_082308656.1 1876820..1877158(+) (pilE) [Neisseria meningitidis strain NCTC10025]
ATGACGGGATTTAATGATGCCGCCGGCGTGGCATCCTCCCCCTCCGACATCAAAGGCAAATATGTTCAGAAAGTTGAAGT
CGCAAAAGGCGTCATTACCGCCCAAATGGCTTCAAGCAACGTAAACAATGAAATCAAAGGCAAAAAACTCTCCCTGTGGG
CCAAGCGTCAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGACAAAGCCGACGCCGACGCCGATGCC
ATTACCGCCGACACCGCCGCCAACAAGAAGATCGACACCAATCATTCCCACGAACCTACATCCCGTCATTCCCGCGAAAG
TGGGAATGACGGGATTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(7-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.33

81.25

0.571
  pilE Neisseria gonorrhoeae MS11

67.033

81.25

0.545

Multiple sequence alignment