Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EL297_RS06360 Genome accession   NZ_LR134525
Coordinates   1075234..1075707 (-) Length   157 a.a.
NCBI ID   WP_002249319.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10025     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1070234..1080707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL297_RS06330 (NCTC10025_01053) yaaA 1070691..1071470 (-) 780 WP_002236895.1 peroxide stress protein YaaA -
  EL297_RS14080 - 1071519..1071644 (-) 126 Protein_1043 IS5/IS1182 family transposase -
  EL297_RS06340 (NCTC10025_01054) dapC 1071732..1072919 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  EL297_RS06345 (NCTC10025_01055) dut 1072995..1073447 (-) 453 WP_002226436.1 dUTP diphosphatase -
  EL297_RS06350 (NCTC10025_01056) - 1073590..1074018 (+) 429 Protein_1046 AzlC family ABC transporter permease -
  EL297_RS06360 (NCTC10025_01057) pilX 1075234..1075707 (-) 474 WP_002249319.1 PilX family type IV pilin Machinery gene
  EL297_RS06365 (NCTC10025_01058) pilK 1075712..1076311 (-) 600 WP_002242528.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL297_RS06370 (NCTC10025_01059) pilJ 1076290..1077264 (-) 975 WP_082308618.1 PilW family protein Machinery gene
  EL297_RS06375 (NCTC10025_01060) pilI 1077261..1077869 (-) 609 WP_002242521.1 type IV pilus modification protein PilV Machinery gene
  EL297_RS06380 (NCTC10025_01061) pilH 1077901..1078566 (-) 666 WP_002242526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL297_RS06385 (NCTC10025_01062) dnaB 1078868..1080274 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17293.01 Da        Isoelectric Point: 9.4513

>NTDB_id=1123924 EL297_RS06360 WP_002249319.1 1075234..1075707(-) (pilX) [Neisseria meningitidis strain NCTC10025]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIERGYQSQLYTEMVGINNVLKQIILKNPQDDNDTLKIRLEALASGYKM
NPKIAKKYSVSVAFANTEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1123924 EL297_RS06360 WP_002249319.1 1075234..1075707(-) (pilX) [Neisseria meningitidis strain NCTC10025]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAGAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGATTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGATACGACTGGAAGCGCTTGCCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGCTTGGTCGG
TGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

87.898

100

0.879
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment