Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EL297_RS06380 Genome accession   NZ_LR134525
Coordinates   1077901..1078566 (-) Length   221 a.a.
NCBI ID   WP_002242526.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10025     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1072901..1083566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL297_RS06345 (NCTC10025_01055) dut 1072995..1073447 (-) 453 WP_002226436.1 dUTP diphosphatase -
  EL297_RS06350 (NCTC10025_01056) - 1073590..1074018 (+) 429 Protein_1046 AzlC family ABC transporter permease -
  EL297_RS06360 (NCTC10025_01057) pilX 1075234..1075707 (-) 474 WP_002249319.1 PilX family type IV pilin Machinery gene
  EL297_RS06365 (NCTC10025_01058) pilK 1075712..1076311 (-) 600 WP_002242528.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL297_RS06370 (NCTC10025_01059) pilJ 1076290..1077264 (-) 975 WP_082308618.1 PilW family protein Machinery gene
  EL297_RS06375 (NCTC10025_01060) pilI 1077261..1077869 (-) 609 WP_002242521.1 type IV pilus modification protein PilV Machinery gene
  EL297_RS06380 (NCTC10025_01061) pilH 1077901..1078566 (-) 666 WP_002242526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL297_RS06385 (NCTC10025_01062) dnaB 1078868..1080274 (-) 1407 WP_002219448.1 replicative DNA helicase -
  EL297_RS06395 (NCTC10025_01063) - 1080437..1081024 (+) 588 WP_002220670.1 superoxide dismutase -
  EL297_RS06415 (NCTC10025_01064) - 1082323..1082832 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EL297_RS06420 (NCTC10025_01065) - 1083164..1083496 (-) 333 WP_002213854.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24667.35 Da        Isoelectric Point: 9.9223

>NTDB_id=1123928 EL297_RS06380 WP_002242526.1 1077901..1078566(-) (pilH) [Neisseria meningitidis strain NCTC10025]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDFSKKEQGMLAFGDKNGNKIYDGDVTDVLLRSVVLNDDINNKRINYAFNHIAFGQTQPATDRVVWTFNQNGTFGYSS
DQNLKNNSKFVYSDGYIQIVLTDAKAVSADEKKFRSAVVLINSSGRVEVCPKNDTRAVCRH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1123928 EL297_RS06380 WP_002242526.1 1077901..1078566(-) (pilH) [Neisseria meningitidis strain NCTC10025]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCATGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGCGACTTCAGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGGCAATAAGATATATGACGGCGA
TGTGACGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGGCCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACATTCGGCTATTCGTCC
GATCAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGCCGATGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACG
ATACGCGCGCCGTATGCCGACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.52

100

0.855

Multiple sequence alignment