Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL310_RS09420 Genome accession   NZ_LR134522
Coordinates   1603092..1603556 (-) Length   154 a.a.
NCBI ID   WP_010981251.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC3372     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1603092..1613606 1603092..1603556 within 0
IS/Tn 1601749..1602402 1603092..1603556 flank 690


Gene organization within MGE regions


Location: 1601749..1613606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL310_RS09405 (NCTC3372_01587) - 1601749..1602402 (-) 654 WP_126375275.1 IS1595 family transposase -
  EL310_RS13650 (NCTC3372_01588) - 1602522..1602980 (-) 459 WP_002234522.1 hypothetical protein -
  EL310_RS09420 (NCTC3372_01589) comE 1603092..1603556 (-) 465 WP_010981251.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL310_RS09460 (NCTC3372_01595) - 1609354..1610160 (-) 807 WP_002245849.1 inner membrane protein YpjD -
  EL310_RS09465 (NCTC3372_01596) ffh 1610381..1611751 (+) 1371 WP_002245848.1 signal recognition particle protein -
  EL310_RS09470 (NCTC3372_01597) dsbA2 1612082..1612777 (-) 696 WP_002215704.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EL310_RS09475 (NCTC3372_01598) - 1613055..1613606 (-) 552 WP_002249239.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16457.69 Da        Isoelectric Point: 10.7894

>NTDB_id=1123872 EL310_RS09420 WP_010981251.1 1603092..1603556(-) (comE) [Neisseria meningitidis strain NCTC3372]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1123872 EL310_RS09420 WP_010981251.1 1603092..1603556(-) (comE) [Neisseria meningitidis strain NCTC3372]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment