Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL310_RS09420 Genome accession   NZ_LR134522
Coordinates   1603092..1603556 (-) Length   154 a.a.
NCBI ID   WP_010981251.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC3372     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1598092..1608556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL310_RS09380 (NCTC3372_01583) - 1598858..1599346 (-) 489 WP_002216373.1 dihydrofolate reductase -
  EL310_RS09385 (NCTC3372_01584) aroG 1599414..1600469 (-) 1056 WP_002212267.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  EL310_RS09395 (NCTC3372_01586) - 1601136..1601393 (+) 258 WP_002231679.1 membrane protein -
  EL310_RS09400 - 1601375..1601584 (-) 210 Protein_1564 transposase -
  EL310_RS09405 (NCTC3372_01587) - 1601749..1602402 (-) 654 WP_126375275.1 IS1595 family transposase -
  EL310_RS13650 (NCTC3372_01588) - 1602522..1602980 (-) 459 WP_002234522.1 hypothetical protein -
  EL310_RS09420 (NCTC3372_01589) comE 1603092..1603556 (-) 465 WP_010981251.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16457.69 Da        Isoelectric Point: 10.7894

>NTDB_id=1123872 EL310_RS09420 WP_010981251.1 1603092..1603556(-) (comE) [Neisseria meningitidis strain NCTC3372]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1123872 EL310_RS09420 WP_010981251.1 1603092..1603556(-) (comE) [Neisseria meningitidis strain NCTC3372]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment