Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EL310_RS03085 Genome accession   NZ_LR134522
Coordinates   527465..528058 (+) Length   197 a.a.
NCBI ID   WP_002246881.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC3372     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 522465..533058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL310_RS03055 (NCTC3372_00539) - 522771..523358 (-) 588 WP_002246908.1 superoxide dismutase -
  EL310_RS03065 (NCTC3372_00540) dnaB 523521..524927 (+) 1407 WP_002219448.1 replicative DNA helicase -
  EL310_RS03070 (NCTC3372_00541) pilH 525236..525904 (+) 669 WP_002246885.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL310_RS03075 (NCTC3372_00542) pilV 525934..526548 (+) 615 WP_002222656.1 type IV pilus modification protein PilV Machinery gene
  EL310_RS03080 (NCTC3372_00543) pilJ 526545..527486 (+) 942 WP_126375179.1 PilW family protein Machinery gene
  EL310_RS03085 (NCTC3372_00544) pilK 527465..528058 (+) 594 WP_002246881.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL310_RS03090 (NCTC3372_00545) pilX 528063..528536 (+) 474 WP_002246911.1 PilX family type IV pilin Machinery gene
  EL310_RS03105 (NCTC3372_00546) - 529900..530328 (-) 429 Protein_523 AzlC family ABC transporter permease -
  EL310_RS03110 (NCTC3372_00547) dut 530471..530923 (+) 453 WP_002226436.1 dUTP diphosphatase -
  EL310_RS03115 (NCTC3372_00548) dapC 530999..532186 (+) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  EL310_RS13985 - 532274..532399 (+) 126 Protein_526 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21569.48 Da        Isoelectric Point: 7.5807

>NTDB_id=1123855 EL310_RS03085 WP_002246881.1 527465..528058(+) (pilK) [Neisseria meningitidis strain NCTC3372]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMEYKKGKGSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1123855 EL310_RS03085 WP_002246881.1 527465..528058(+) (pilK) [Neisseria meningitidis strain NCTC3372]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAAATCTACAG
GCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCAAGGGAAGCGTCAGCAAACCACCACGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment