Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EL310_RS03070 Genome accession   NZ_LR134522
Coordinates   525236..525904 (+) Length   222 a.a.
NCBI ID   WP_002246885.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC3372     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520236..530904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL310_RS03035 (NCTC3372_00537) - 520348..520680 (+) 333 WP_002213854.1 hypothetical protein -
  EL310_RS03040 (NCTC3372_00538) - 521012..521521 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EL310_RS03055 (NCTC3372_00539) - 522771..523358 (-) 588 WP_002246908.1 superoxide dismutase -
  EL310_RS03065 (NCTC3372_00540) dnaB 523521..524927 (+) 1407 WP_002219448.1 replicative DNA helicase -
  EL310_RS03070 (NCTC3372_00541) pilH 525236..525904 (+) 669 WP_002246885.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL310_RS03075 (NCTC3372_00542) pilV 525934..526548 (+) 615 WP_002222656.1 type IV pilus modification protein PilV Machinery gene
  EL310_RS03080 (NCTC3372_00543) pilJ 526545..527486 (+) 942 WP_126375179.1 PilW family protein Machinery gene
  EL310_RS03085 (NCTC3372_00544) pilK 527465..528058 (+) 594 WP_002246881.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL310_RS03090 (NCTC3372_00545) pilX 528063..528536 (+) 474 WP_002246911.1 PilX family type IV pilin Machinery gene
  EL310_RS03105 (NCTC3372_00546) - 529900..530328 (-) 429 Protein_523 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24848.46 Da        Isoelectric Point: 10.0112

>NTDB_id=1123852 EL310_RS03070 WP_002246885.1 525236..525904(+) (pilH) [Neisseria meningitidis strain NCTC3372]
MCTRKQQGFTLTELLIVMAIAAIMAMIALPNMSQWIASRRIASHAERVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NKCDSGKKGQGMLAFGDKNGNKIYDNDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTK
DQHLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1123852 EL310_RS03070 WP_002246885.1 525236..525904(+) (pilH) [Neisseria meningitidis strain NCTC3372]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGATATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.973

99.55

0.856

Multiple sequence alignment