Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EL253_RS04830 Genome accession   NZ_LR134518
Coordinates   1038205..1038972 (+) Length   255 a.a.
NCBI ID   WP_104723786.1    Uniprot ID   A0A3D8IXL3
Organism   Helicobacter cholecystus strain NCTC13205     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1033205..1043972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL253_RS04800 (NCTC13205_00983) - 1033862..1034170 (-) 309 WP_126498354.1 DUF5666 domain-containing protein -
  EL253_RS04805 (NCTC13205_00984) moaA 1034485..1035444 (+) 960 WP_104723796.1 GTP 3',8-cyclase MoaA -
  EL253_RS04810 (NCTC13205_00985) mqnE 1035487..1036554 (+) 1068 WP_104723794.1 aminofutalosine synthase MqnE -
  EL253_RS04815 (NCTC13205_00986) - 1036566..1037015 (+) 450 WP_104723792.1 phosphoribosyltransferase -
  EL253_RS04820 (NCTC13205_00987) ilvC 1037025..1038020 (+) 996 WP_104723790.1 ketol-acid reductoisomerase -
  EL253_RS04825 (NCTC13205_00988) - 1038002..1038208 (+) 207 WP_104723788.1 hypothetical protein -
  EL253_RS04830 (NCTC13205_00989) dprA 1038205..1038972 (+) 768 WP_104723786.1 DNA-processing protein DprA Machinery gene
  EL253_RS04835 (NCTC13205_00990) dprB 1038962..1039381 (+) 420 WP_104723784.1 Holliday junction resolvase RuvX Machinery gene
  EL253_RS04840 (NCTC13205_00991) - 1039382..1040146 (-) 765 WP_158653674.1 Tfp pilus assembly protein FimT/FimU -
  EL253_RS04845 (NCTC13205_00992) - 1040127..1041308 (-) 1182 WP_104723782.1 hypothetical protein -
  EL253_RS04850 (NCTC13205_00993) - 1041293..1041697 (-) 405 WP_104723780.1 CoA-binding protein -
  EL253_RS04855 (NCTC13205_00994) - 1041666..1042589 (-) 924 WP_104723778.1 DMT family transporter -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28587.26 Da        Isoelectric Point: 8.9548

>NTDB_id=1123768 EL253_RS04830 WP_104723786.1 1038205..1038972(+) (dprA) [Helicobacter cholecystus strain NCTC13205]
MKIIPTPLEFNLLKNPPKKIFAKGDTGLLSSKRKIAIVGTRKPNPYARVYTQTLAKMIAKNGGVVVSGGALGIDIIAHSG
AFPRTIMIAPTDLEHIYPSSNAKIISTIYSEALALSEYENISLPRGYHFLQRNRLVIALSDCVIIPQADLCSGSMQSARI
AIELKKPLYVLPHRLGESEGTNALLADREAKAIYCVNEWIKEWFEDSFAPVNDEVLKFCKRMPSFEEAYERFGEKIYEYE
FEGKIKRNNGILYVL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1123768 EL253_RS04830 WP_104723786.1 1038205..1038972(+) (dprA) [Helicobacter cholecystus strain NCTC13205]
ATGAAGATTATCCCCACTCCCTTGGAGTTTAATCTCTTAAAAAATCCTCCTAAAAAGATTTTTGCCAAGGGTGATACAGG
ATTATTATCTTCTAAGAGAAAAATTGCAATTGTAGGGACACGCAAGCCCAATCCTTATGCAAGAGTTTATACTCAAACTT
TAGCTAAGATGATTGCAAAGAATGGGGGAGTGGTTGTAAGTGGTGGAGCCTTGGGGATAGACATCATCGCTCATAGTGGA
GCTTTTCCTCGCACGATTATGATTGCCCCAACCGATCTAGAACATATTTATCCTTCAAGCAATGCAAAAATCATTTCCAC
GATTTATTCTGAAGCTCTAGCATTGAGTGAATATGAAAATATTAGCTTACCTAGAGGGTATCATTTCTTACAAAGAAATC
GCCTTGTGATTGCTTTAAGCGATTGTGTGATTATCCCACAAGCCGACTTGTGTAGTGGATCTATGCAGAGTGCAAGAATT
GCCATAGAGTTGAAAAAGCCTCTTTATGTTTTGCCTCATCGCCTAGGAGAGAGCGAGGGAACAAATGCCTTGCTTGCAGA
TAGAGAGGCCAAGGCAATTTATTGTGTGAATGAATGGATTAAAGAATGGTTTGAGGATTCATTTGCTCCAGTGAATGATG
AGGTTTTGAAGTTTTGTAAGAGAATGCCTAGTTTTGAGGAAGCATATGAGCGTTTTGGAGAGAAAATTTATGAATATGAG
TTTGAGGGAAAAATCAAAAGAAATAATGGAATCCTTTATGTGCTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D8IXL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

53.2

98.039

0.522
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.466

87.451

0.459

Multiple sequence alignment