Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | EL253_RS04835 | Genome accession | NZ_LR134518 |
| Coordinates | 1038962..1039381 (+) | Length | 139 a.a. |
| NCBI ID | WP_104723784.1 | Uniprot ID | A0A3D8IZL9 |
| Organism | Helicobacter cholecystus strain NCTC13205 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1033962..1044381
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL253_RS04805 (NCTC13205_00984) | moaA | 1034485..1035444 (+) | 960 | WP_104723796.1 | GTP 3',8-cyclase MoaA | - |
| EL253_RS04810 (NCTC13205_00985) | mqnE | 1035487..1036554 (+) | 1068 | WP_104723794.1 | aminofutalosine synthase MqnE | - |
| EL253_RS04815 (NCTC13205_00986) | - | 1036566..1037015 (+) | 450 | WP_104723792.1 | phosphoribosyltransferase | - |
| EL253_RS04820 (NCTC13205_00987) | ilvC | 1037025..1038020 (+) | 996 | WP_104723790.1 | ketol-acid reductoisomerase | - |
| EL253_RS04825 (NCTC13205_00988) | - | 1038002..1038208 (+) | 207 | WP_104723788.1 | hypothetical protein | - |
| EL253_RS04830 (NCTC13205_00989) | dprA | 1038205..1038972 (+) | 768 | WP_104723786.1 | DNA-processing protein DprA | Machinery gene |
| EL253_RS04835 (NCTC13205_00990) | dprB | 1038962..1039381 (+) | 420 | WP_104723784.1 | Holliday junction resolvase RuvX | Machinery gene |
| EL253_RS04840 (NCTC13205_00991) | - | 1039382..1040146 (-) | 765 | WP_158653674.1 | Tfp pilus assembly protein FimT/FimU | - |
| EL253_RS04845 (NCTC13205_00992) | - | 1040127..1041308 (-) | 1182 | WP_104723782.1 | hypothetical protein | - |
| EL253_RS04850 (NCTC13205_00993) | - | 1041293..1041697 (-) | 405 | WP_104723780.1 | CoA-binding protein | - |
| EL253_RS04855 (NCTC13205_00994) | - | 1041666..1042589 (-) | 924 | WP_104723778.1 | DMT family transporter | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 16117.04 Da Isoelectric Point: 8.6952
>NTDB_id=1123769 EL253_RS04835 WP_104723784.1 1038962..1039381(+) (dprB) [Helicobacter cholecystus strain NCTC13205]
MCSNLLACDIGLKRIGIALYCNHIILPLQPILRKNRKQASQAFKTLLEEKQIHTLIVGIPKSELNEEEHIMERRIKHFIS
LVDFKGQIIYVDESYSSIEAQERLFLLKKKERSEKIKNGELDSLAAMIILERYLLNPTL
MCSNLLACDIGLKRIGIALYCNHIILPLQPILRKNRKQASQAFKTLLEEKQIHTLIVGIPKSELNEEEHIMERRIKHFIS
LVDFKGQIIYVDESYSSIEAQERLFLLKKKERSEKIKNGELDSLAAMIILERYLLNPTL
Nucleotide
Download Length: 420 bp
>NTDB_id=1123769 EL253_RS04835 WP_104723784.1 1038962..1039381(+) (dprB) [Helicobacter cholecystus strain NCTC13205]
ATGTGCTCTAATCTTCTTGCTTGTGATATTGGATTAAAACGTATTGGCATAGCGCTTTATTGCAATCATATTATTTTGCC
CCTCCAACCCATTCTTAGAAAAAACCGTAAACAAGCCTCACAAGCATTTAAAACTTTATTAGAAGAAAAGCAAATCCATA
CGCTTATTGTGGGGATTCCAAAAAGTGAGCTTAATGAAGAAGAACACATAATGGAACGTAGAATCAAGCATTTTATTTCT
CTTGTAGATTTTAAGGGTCAGATTATTTATGTTGATGAGAGTTATAGTTCAATAGAAGCTCAGGAGCGATTATTTTTGTT
GAAAAAAAAAGAACGAAGTGAAAAAATTAAAAACGGTGAGCTTGATAGTCTTGCGGCAATGATTATATTGGAGAGATATC
TTTTAAACCCAACTTTATAA
ATGTGCTCTAATCTTCTTGCTTGTGATATTGGATTAAAACGTATTGGCATAGCGCTTTATTGCAATCATATTATTTTGCC
CCTCCAACCCATTCTTAGAAAAAACCGTAAACAAGCCTCACAAGCATTTAAAACTTTATTAGAAGAAAAGCAAATCCATA
CGCTTATTGTGGGGATTCCAAAAAGTGAGCTTAATGAAGAAGAACACATAATGGAACGTAGAATCAAGCATTTTATTTCT
CTTGTAGATTTTAAGGGTCAGATTATTTATGTTGATGAGAGTTATAGTTCAATAGAAGCTCAGGAGCGATTATTTTTGTT
GAAAAAAAAAGAACGAAGTGAAAAAATTAAAAACGGTGAGCTTGATAGTCTTGCGGCAATGATTATATTGGAGAGATATC
TTTTAAACCCAACTTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
55.039 |
92.806 |
0.511 |