Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   EL247_RS00640 Genome accession   NZ_LR134509
Coordinates   130720..130983 (-) Length   87 a.a.
NCBI ID   WP_104745398.1    Uniprot ID   -
Organism   Helicobacter pullorum strain NCTC13154     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125720..135983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL247_RS00620 (NCTC13154_00128) - 126241..127173 (-) 933 WP_005021885.1 ABC transporter permease subunit -
  EL247_RS00625 (NCTC13154_00129) nikA 127173..128711 (-) 1539 WP_172594036.1 nickel ABC transporter substrate-binding protein -
  EL247_RS00630 (NCTC13154_00130) - 128912..129343 (+) 432 WP_126441912.1 globin domain-containing protein -
  EL247_RS00635 (NCTC13154_00131) ilvC 129605..130630 (-) 1026 WP_005021890.1 ketol-acid reductoisomerase -
  EL247_RS00640 (NCTC13154_00132) Cj0011c 130720..130983 (-) 264 WP_104745398.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL247_RS00645 (NCTC13154_00133) - 131096..132613 (-) 1518 WP_104745397.1 YifB family Mg chelatase-like AAA ATPase -
  EL247_RS00650 (NCTC13154_00134) def 132616..133122 (-) 507 WP_040499866.1 peptide deformylase -
  EL247_RS00655 (NCTC13154_00135) - 133122..134225 (-) 1104 WP_005021894.1 diguanylate cyclase domain-containing protein -
  EL247_RS00660 (NCTC13154_00136) clpP 134235..134825 (-) 591 WP_005021895.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9724.55 Da        Isoelectric Point: 9.9769

>NTDB_id=1123545 EL247_RS00640 WP_104745398.1 130720..130983(-) (Cj0011c) [Helicobacter pullorum strain NCTC13154]
MLKLLATLFLAISFLFGAVDLNKASKEELMSIKGIGEAKAQAIIDYREKTPLKSIDDLKNIKGFGPKIIEKIRPNIVVEN
QEIQPKQ

Nucleotide


Download         Length: 264 bp        

>NTDB_id=1123545 EL247_RS00640 WP_104745398.1 130720..130983(-) (Cj0011c) [Helicobacter pullorum strain NCTC13154]
ATGTTAAAACTTTTAGCAACATTATTTTTGGCAATATCATTCCTTTTTGGTGCTGTGGATTTAAACAAAGCAAGCAAAGA
AGAGTTAATGAGTATCAAAGGCATAGGAGAGGCAAAAGCACAAGCCATCATTGATTATAGAGAAAAAACTCCCCTAAAAT
CTATTGATGATTTAAAAAACATCAAAGGTTTTGGACCCAAAATTATTGAGAAAATCCGTCCCAATATAGTAGTAGAAAAT
CAAGAAATTCAACCCAAGCAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.165

90.805

0.483
  comE Neisseria gonorrhoeae MS11

43.243

85.057

0.368
  comE Neisseria gonorrhoeae MS11

43.243

85.057

0.368
  comE Neisseria gonorrhoeae MS11

43.243

85.057

0.368
  comE Neisseria gonorrhoeae MS11

43.243

85.057

0.368

Multiple sequence alignment