Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   EL230_RS09710 Genome accession   NZ_LR134490
Coordinates   1932686..1933033 (-) Length   115 a.a.
NCBI ID   WP_005693346.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11873     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1927686..1938033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL230_RS09685 (NCTC11873_01947) otnI 1928153..1928929 (-) 777 WP_126513689.1 2-oxo-tetronate isomerase -
  EL230_RS09690 (NCTC11873_01948) otnC 1928932..1929564 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  EL230_RS09695 (NCTC11873_01949) otnK 1929561..1930802 (-) 1242 WP_050845323.1 3-oxo-tetronate kinase -
  EL230_RS09700 (NCTC11873_01950) ltnD 1930805..1931710 (-) 906 WP_005665973.1 L-threonate dehydrogenase -
  EL230_RS09705 (NCTC11873_01951) - 1931881..1932639 (+) 759 WP_048955075.1 DeoR/GlpR family DNA-binding transcription regulator -
  EL230_RS09710 (NCTC11873_01952) comE1/comEA 1932686..1933033 (-) 348 WP_005693346.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL230_RS09715 (NCTC11873_01953) ispH 1933202..1934146 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EL230_RS09720 (NCTC11873_01954) lspA 1934143..1934658 (-) 516 WP_042593739.1 signal peptidase II -
  EL230_RS09725 (NCTC11873_01955) - 1934728..1936287 (-) 1560 WP_048955073.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12355.16 Da        Isoelectric Point: 8.0085

>NTDB_id=1123210 EL230_RS09710 WP_005693346.1 1932686..1933033(-) (comE1/comEA) [Haemophilus influenzae strain NCTC11873]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1123210 EL230_RS09710 WP_005693346.1 1932686..1933033(-) (comE1/comEA) [Haemophilus influenzae strain NCTC11873]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACTGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGTAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

98.214

97.391

0.957
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment