Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | EL230_RS03185 | Genome accession | NZ_LR134490 |
| Coordinates | 633348..633761 (+) | Length | 137 a.a. |
| NCBI ID | WP_126513465.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NCTC11873 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 628348..638761
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL230_RS03165 (NCTC11873_00622) | - | 628836..631430 (-) | 2595 | WP_005649307.1 | penicillin-binding protein 1A | - |
| EL230_RS03170 (NCTC11873_00623) | comA | 631529..632326 (+) | 798 | WP_005649306.1 | pilus assembly protein PilM | Machinery gene |
| EL230_RS03175 (NCTC11873_00624) | comB | 632327..632833 (+) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| EL230_RS03180 (NCTC11873_00625) | comC | 632830..633351 (+) | 522 | WP_005649304.1 | competence protein ComC | Machinery gene |
| EL230_RS03185 (NCTC11873_00626) | comD | 633348..633761 (+) | 414 | WP_126513465.1 | pilus assembly protein PilP | Machinery gene |
| EL230_RS03190 (NCTC11873_00627) | comE | 633771..635108 (+) | 1338 | WP_126513466.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| EL230_RS03195 (NCTC11873_00628) | - | 635121..635807 (+) | 687 | WP_126513467.1 | ComF family protein | - |
| EL230_RS03200 (NCTC11873_00630) | nfuA | 635883..636478 (+) | 596 | Protein_604 | Fe-S biogenesis protein NfuA | - |
| EL230_RS03205 (NCTC11873_00631) | nudC | 636545..637339 (+) | 795 | WP_005666520.1 | NAD(+) diphosphatase | - |
| EL230_RS03210 (NCTC11873_00632) | - | 637375..637965 (+) | 591 | WP_005649296.1 | YjaG family protein | - |
| EL230_RS03215 (NCTC11873_00633) | - | 638105..638377 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15700.92 Da Isoelectric Point: 4.9103
>NTDB_id=1123192 EL230_RS03185 WP_126513465.1 633348..633761(+) (comD) [Haemophilus influenzae strain NCTC11873]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEHRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQIYSVLEGVDVAQEGYVVTKINQNKVQFMRKLGEQCDRAEQKELSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEHRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQIYSVLEGVDVAQEGYVVTKINQNKVQFMRKLGEQCDRAEQKELSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1123192 EL230_RS03185 WP_126513465.1 633348..633761(+) (comD) [Haemophilus influenzae strain NCTC11873]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAACATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCATTATTGCAGGATCAGGCTTTGCAAATTTACAGCGTTTTAGAAGGTGTTGATGTGGCTCAAGAAGGATA
TGTTGTAACAAAAATCAATCAAAATAAAGTTCAATTTATGCGTAAGCTCGGTGAGCAATGTGATAGAGCTGAACAGAAAG
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAACATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCATTATTGCAGGATCAGGCTTTGCAAATTTACAGCGTTTTAGAAGGTGTTGATGTGGCTCAAGAAGGATA
TGTTGTAACAAAAATCAATCAAAATAAAGTTCAATTTATGCGTAAGCTCGGTGAGCAATGTGATAGAGCTGAACAGAAAG
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
93.431 |
100 |
0.934 |
| comD | Haemophilus influenzae Rd KW20 |
92.701 |
100 |
0.927 |