Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EL230_RS03180 Genome accession   NZ_LR134490
Coordinates   632830..633351 (+) Length   173 a.a.
NCBI ID   WP_005649304.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11873     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627830..638351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL230_RS03160 (NCTC11873_00621) - 627918..628763 (-) 846 WP_005666516.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  EL230_RS03165 (NCTC11873_00622) - 628836..631430 (-) 2595 WP_005649307.1 penicillin-binding protein 1A -
  EL230_RS03170 (NCTC11873_00623) comA 631529..632326 (+) 798 WP_005649306.1 pilus assembly protein PilM Machinery gene
  EL230_RS03175 (NCTC11873_00624) comB 632327..632833 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  EL230_RS03180 (NCTC11873_00625) comC 632830..633351 (+) 522 WP_005649304.1 competence protein ComC Machinery gene
  EL230_RS03185 (NCTC11873_00626) comD 633348..633761 (+) 414 WP_126513465.1 pilus assembly protein PilP Machinery gene
  EL230_RS03190 (NCTC11873_00627) comE 633771..635108 (+) 1338 WP_126513466.1 type IV pilus secretin PilQ family protein Machinery gene
  EL230_RS03195 (NCTC11873_00628) - 635121..635807 (+) 687 WP_126513467.1 ComF family protein -
  EL230_RS03200 (NCTC11873_00630) nfuA 635883..636478 (+) 596 Protein_604 Fe-S biogenesis protein NfuA -
  EL230_RS03205 (NCTC11873_00631) nudC 636545..637339 (+) 795 WP_005666520.1 NAD(+) diphosphatase -
  EL230_RS03210 (NCTC11873_00632) - 637375..637965 (+) 591 WP_005649296.1 YjaG family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19997.18 Da        Isoelectric Point: 10.0952

>NTDB_id=1123191 EL230_RS03180 WP_005649304.1 632830..633351(+) (comC) [Haemophilus influenzae strain NCTC11873]
MKAFFNDPFTPFGKWLSQPFYVHGLTFLLLLSTVIFRPVLDYIEGSSRFHEIENELAVKRSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSSQLSVSRLQFIKPEDSPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1123191 EL230_RS03180 WP_005649304.1 632830..633351(+) (comC) [Haemophilus influenzae strain NCTC11873]
ATGAAAGCTTTTTTTAACGATCCTTTTACTCCTTTTGGAAAATGGCTAAGTCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTACGGTGATTTTTCGCCCCGTTTTAGATTATATTGAGGGGAGTTCACGTTTCCATGAAATTGAAA
ATGAGTTAGCGGTGAAACGTTCAGAATTGTTGCATCAACAGAAAATTTTAACCTCTTTACAACAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCACGCAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAGAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCAGAAGACAGCCCATTG
CAAACCGAGATTATTTTTCAGCTAGATAAGGAAACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

98.844

100

0.988
  comC Haemophilus influenzae Rd KW20

97.688

100

0.977

Multiple sequence alignment