Detailed information NTG0112318

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: S7S_RS03280
• Genome accession: NZ_CP004387
• Coordinates: 694010..695389 (-)
• Length: 459 a.a.
• NCBI ID: WP_008739913.1
• Uniprot ID: -
• Organism: Isoalcanivorax pacificus W11-5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 689010..700389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S7S_RS03275 (S7S_03255)	-	691833..692225 (+)	393	WP_035205921.1	type IV pilin protein	-
S7S_RS20165 (S7S_03260)	-	692366..692899 (+)	534	WP_420795642.1	GspH/FimT family protein	-
S7S_RS19095 (S7S_03265)	-	692967..694040 (+)	1074	WP_008739914.1	NAD(P)/FAD-dependent oxidoreductase	-
S7S_RS03280 (S7S_03270)	pilR	694010..695389 (-)	1380	WP_008739913.1	sigma-54-dependent transcriptional regulator	Regulator
S7S_RS03285 (S7S_03275)	-	695386..696963 (-)	1578	WP_008739909.1	two-component system sensor histidine kinase NtrB	-
S7S_RS03290 (S7S_03280)	-	696956..697189 (-)	234	WP_008739907.1	PP0621 family protein	-
S7S_RS03295 (S7S_03285)	-	697360..698985 (+)	1626	WP_008739906.1	NAD+ synthase	-
S7S_RS03300 (S7S_03290)	-	699009..699830 (-)	822	WP_008739905.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 51732.96 Da
• Isoelectric Point: 5.4381

>NTDB_id=112318 S7S_RS03280 WP_008739913.1 694010..695389(-) (pilR) [Isoalcanivorax pacificus W11-5]
MTTEKRQVLVVDDEADLRELLVITLGRMKLDAQAVGTVSEARRALQENTFDLCLTDMNLPDGDGIELVRHINQHIPELPV
AMITAYGNMETATLAMKEGAFDFIAKPVSLDRLRRLVDDGLGIRDKAPSGASLEQLVGEAPSMQQLRTQIAKLARSQAPI
YISGESGSGKERVARLIHTLGPRHEKPFIAVNCGAIPSELMESEFFGHRKGSFTGAFEDRKGLFREADDGTLFLDEVADL
PLHMQVKLLRAIQEKSIRPVGEAKEFDVNIRIVCATHKDLSEEVVQGRFRQDLYYRLNVIETRVPPLRERREDIPLLVQH
IMTRLCQQWQIDAPALSREARDVLQQYSFPGNVRELENILERALTLADGPTIEVRHLQLREQNETPASNGSSREASRPAS
QPLEDYLQEIEKREILRALDATLWNRTAAAKKLGMTFRSLRYRLKKLGLDQGGDDDENE

Nucleotide

• Length: 1380 bp

>NTDB_id=112318 S7S_RS03280 WP_008739913.1 694010..695389(-) (pilR) [Isoalcanivorax pacificus W11-5]
ATGACGACAGAAAAACGACAAGTACTGGTAGTGGATGATGAAGCAGACCTGCGGGAACTGCTGGTCATCACCCTCGGACG
CATGAAACTCGACGCCCAGGCCGTCGGCACCGTCAGCGAAGCGCGCCGCGCCTTGCAGGAAAACACCTTTGACCTGTGCC
TGACGGACATGAACCTGCCCGACGGTGACGGCATCGAACTGGTGCGCCACATCAACCAGCACATTCCTGAGCTGCCGGTG
GCGATGATCACCGCCTACGGCAATATGGAAACCGCCACCCTGGCGATGAAGGAAGGCGCGTTCGATTTCATTGCCAAGCC
GGTCTCACTGGATCGCCTGCGCCGCCTGGTGGACGATGGCCTCGGCATCCGCGACAAGGCACCTTCCGGCGCTAGCCTGG
AACAGCTGGTGGGCGAAGCCCCTTCCATGCAGCAACTGCGCACGCAGATCGCCAAGCTGGCACGCAGCCAGGCGCCGATC
TATATCAGCGGCGAATCCGGCAGCGGCAAGGAACGCGTGGCCCGATTGATCCACACGCTCGGCCCGCGTCACGAGAAGCC
GTTTATTGCCGTGAACTGCGGCGCCATTCCCTCGGAACTGATGGAAAGTGAATTTTTCGGCCATCGCAAGGGCAGTTTCA
CCGGCGCGTTCGAAGACCGAAAAGGGCTGTTCCGTGAAGCGGACGACGGCACGCTGTTTCTCGATGAAGTAGCAGACTTG
CCACTGCACATGCAGGTCAAGCTGCTGCGTGCCATTCAGGAGAAAAGCATCCGTCCCGTGGGTGAGGCGAAGGAGTTCGA
TGTGAATATCCGCATCGTCTGCGCCACCCACAAGGACCTGTCCGAGGAGGTGGTGCAGGGGCGCTTCCGGCAGGATCTGT
ATTATCGCCTGAACGTGATTGAAACCCGTGTGCCGCCGCTACGCGAACGTCGCGAGGATATCCCGCTGCTGGTGCAGCAC
ATCATGACGCGGCTGTGCCAGCAGTGGCAGATTGACGCGCCGGCACTCAGCCGCGAGGCGCGTGATGTACTACAACAATA
CAGCTTCCCGGGCAACGTTCGTGAGCTGGAAAACATTCTGGAGCGTGCGCTGACGCTGGCGGATGGGCCCACCATCGAAG
TGCGCCACCTGCAATTACGCGAGCAGAACGAAACGCCAGCCAGCAATGGCAGCAGCCGTGAGGCCAGCCGCCCGGCCAGC
CAGCCGCTGGAAGATTATCTGCAGGAAATTGAGAAACGCGAGATTCTGCGCGCATTGGACGCAACGCTGTGGAACCGCAC
AGCTGCCGCCAAAAAACTGGGTATGACGTTCCGCTCATTACGCTATCGGCTGAAAAAGCTTGGCCTGGATCAGGGCGGCG
ATGACGACGAGAATGAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-117)

• Bacterial regulatory protein, Fis family (HTH_8) (407-447)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.693	97.821	0.603
pilR	Acinetobacter baumannii strain A118	50.644	100	0.514
luxO	Vibrio cholerae strain A1552	36.971	97.821	0.362