Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KQ76_RS08395 Genome accession   NZ_CP009361
Coordinates   1709208..1709810 (-) Length   200 a.a.
NCBI ID   WP_000271546.1    Uniprot ID   Q6GG62
Organism   Staphylococcus aureus strain ATCC 25923     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1704208..1714810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ76_RS08375 (KQ76_08540) yajC 1705704..1705964 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  KQ76_RS08380 (KQ76_08545) tgt 1705983..1707122 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  KQ76_RS08385 (KQ76_08550) queA 1707145..1708170 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KQ76_RS08390 (KQ76_08555) ruvB 1708172..1709176 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KQ76_RS08395 (KQ76_08560) ruvA 1709208..1709810 (-) 603 WP_000271546.1 Holliday junction branch migration protein RuvA Machinery gene
  KQ76_RS08400 (KQ76_08565) - 1709824..1710279 (-) 456 WP_000368902.1 ACT domain-containing protein -
  KQ76_RS08405 (KQ76_08570) obgE 1710292..1711584 (-) 1293 WP_000496092.1 GTPase ObgE -
  KQ76_RS08410 (KQ76_08575) rpmA 1712071..1712355 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  KQ76_RS08415 (KQ76_08580) - 1712367..1712687 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  KQ76_RS08420 (KQ76_08585) rplU 1712693..1713001 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  KQ76_RS08425 (KQ76_08590) mreD 1713294..1713824 (-) 531 WP_001259929.1 rod shape-determining protein MreD -
  KQ76_RS08430 (KQ76_08595) mreC 1713824..1714666 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22292.44 Da        Isoelectric Point: 5.6716

>NTDB_id=112307 KQ76_RS08395 WP_000271546.1 1709208..1709810(-) (ruvA) [Staphylococcus aureus strain ATCC 25923]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTEQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=112307 KQ76_RS08395 WP_000271546.1 1709208..1709810(-) (ruvA) [Staphylococcus aureus strain ATCC 25923]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTCACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACACCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGAGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment