Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   EL215_RS09685 Genome accession   NZ_LR134481
Coordinates   1950359..1951075 (-) Length   238 a.a.
NCBI ID   WP_126472067.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain NCTC10665     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1945359..1956075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL215_RS09665 (NCTC10665_01946) nrdR 1945472..1945921 (-) 450 WP_049355381.1 transcriptional regulator NrdR -
  EL215_RS09670 (NCTC10665_01947) recC 1945999..1949358 (-) 3360 WP_126471807.1 exodeoxyribonuclease V subunit gamma -
  EL215_RS09675 (NCTC10665_01948) comQ 1949396..1949662 (-) 267 WP_049364346.1 DUF5374 domain-containing protein Machinery gene
  EL215_RS09680 (NCTC10665_01949) comP 1949676..1950356 (-) 681 WP_126471809.1 DUF2572 family protein Machinery gene
  EL215_RS09685 (NCTC10665_01950) comO 1950359..1951075 (-) 717 WP_126472067.1 PulJ/GspJ family protein Machinery gene
  EL215_RS09690 (NCTC10665_01951) comN 1951072..1951590 (-) 519 WP_126471811.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  EL215_RS09695 (NCTC10665_01952) suhB 1951791..1952591 (+) 801 WP_126471813.1 inositol-1-monophosphatase -
  EL215_RS09700 (NCTC10665_01953) - 1952643..1953464 (-) 822 WP_126469737.1 IS3 family transposase -
  EL215_RS09705 (NCTC10665_01954) - 1953449..1953802 (-) 354 WP_126469735.1 helix-turn-helix domain-containing protein -
  EL215_RS09710 (NCTC10665_01955) bioB 1953885..1954901 (-) 1017 WP_049355387.1 biotin synthase BioB -
  EL215_RS09715 (NCTC10665_01956) thiQ 1954976..1955605 (-) 630 WP_049355388.1 thiamine ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26728.82 Da        Isoelectric Point: 7.0447

>NTDB_id=1123046 EL215_RS09685 WP_126472067.1 1950359..1951075(-) (comO) [Haemophilus parainfluenzae strain NCTC10665]
MKPLKGETLLSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRAANLKLIEDNLAL
FELDEKGTAITIAQADNAPLNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNDKMIETKQTYKNAV
NADCRSEECQRALTQSTCNAGGGWTDLLDEKEFDISQLRFDWLKAGKGIEIKLAGNLTTHKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1123046 EL215_RS09685 WP_126472067.1 1950359..1951075(-) (comO) [Haemophilus parainfluenzae strain NCTC10665]
ATGAAACCATTAAAAGGTGAAACATTGCTGAGCTTATTGATTTCACTTGGCTTATCCGCTTTATTATTGTTATTGGTTGC
ACAATTTTATGCCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTTAAATTACAAGCGGAATTACAACGCACAA
TTCAACTCATCGGGAAAGACCTGCGCCGCGTAGGCTTTCGAGCCGCAAACCTAAAACTCATCGAAGATAATCTCGCTTTA
TTTGAATTAGACGAAAAGGGCACAGCAATAACCATTGCTCAAGCAGACAATGCCCCATTAAATAGCTGTGTTTTATTTTT
TTATGATTTAAATAGCAATGGCTGTATTGGTGAAAAGTACACAAAAAATACCTGCGTAAATGGCGTTAAAAATGTGGCAA
AAAATATCGAAAAGGAGCTATTTGGTTACAAACTTAACGACAAAATGATTGAAACCAAACAAACTTATAAAAATGCGGTA
AATGCGGATTGTCGTTCGGAAGAATGTCAGCGTGCTTTAACGCAATCTACTTGTAACGCGGGTGGTGGATGGACAGATTT
ATTGGATGAAAAAGAGTTTGATATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATCAAACTCG
CGGGAAATCTTACAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

63.248

98.319

0.622

Multiple sequence alignment