Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   EL215_RS09680 Genome accession   NZ_LR134481
Coordinates   1949676..1950356 (-) Length   226 a.a.
NCBI ID   WP_126471809.1    Uniprot ID   A0A3S4WAH0
Organism   Haemophilus parainfluenzae strain NCTC10665     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944676..1955356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL215_RS09665 (NCTC10665_01946) nrdR 1945472..1945921 (-) 450 WP_049355381.1 transcriptional regulator NrdR -
  EL215_RS09670 (NCTC10665_01947) recC 1945999..1949358 (-) 3360 WP_126471807.1 exodeoxyribonuclease V subunit gamma -
  EL215_RS09675 (NCTC10665_01948) comQ 1949396..1949662 (-) 267 WP_049364346.1 DUF5374 domain-containing protein Machinery gene
  EL215_RS09680 (NCTC10665_01949) comP 1949676..1950356 (-) 681 WP_126471809.1 DUF2572 family protein Machinery gene
  EL215_RS09685 (NCTC10665_01950) comO 1950359..1951075 (-) 717 WP_126472067.1 PulJ/GspJ family protein Machinery gene
  EL215_RS09690 (NCTC10665_01951) comN 1951072..1951590 (-) 519 WP_126471811.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  EL215_RS09695 (NCTC10665_01952) suhB 1951791..1952591 (+) 801 WP_126471813.1 inositol-1-monophosphatase -
  EL215_RS09700 (NCTC10665_01953) - 1952643..1953464 (-) 822 WP_126469737.1 IS3 family transposase -
  EL215_RS09705 (NCTC10665_01954) - 1953449..1953802 (-) 354 WP_126469735.1 helix-turn-helix domain-containing protein -
  EL215_RS09710 (NCTC10665_01955) bioB 1953885..1954901 (-) 1017 WP_049355387.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25188.05 Da        Isoelectric Point: 10.0535

>NTDB_id=1123045 EL215_RS09680 WP_126471809.1 1949676..1950356(-) (comP) [Haemophilus parainfluenzae strain NCTC10665]
MKKGIVTLTALILLSGLLALILLFDEQIFAFFRAQMSQRKYYVEQSLPLQKISQQQQTHICQNLSLNGAGKVKQVFFESS
GAEDKVAYSVWCKRAALFKKSPTKGINENRLRDFISSEKQADFQPHFVKVDTTLTAQKKPQVYWITQSQLEIKGNVSGIL
LAEGNLTLTGKGRISGAVITGGSLKLEEGVTVAYGKAVVTKLVREYSQWHLVDKSWSDLSAQNQSE

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1123045 EL215_RS09680 WP_126471809.1 1949676..1950356(-) (comP) [Haemophilus parainfluenzae strain NCTC10665]
ATGAAAAAAGGGATTGTGACACTAACGGCACTGATTTTACTTTCGGGATTATTGGCGCTGATCTTATTATTTGATGAACA
GATCTTTGCATTTTTTCGAGCTCAAATGAGTCAGCGAAAATATTATGTAGAACAGAGTCTTCCTTTACAGAAAATCAGTC
AGCAGCAACAAACGCACATTTGCCAAAATTTGTCTTTAAATGGTGCTGGAAAAGTGAAACAAGTCTTTTTCGAGTCTTCA
GGGGCAGAGGATAAAGTCGCCTATTCTGTTTGGTGTAAACGTGCAGCGTTATTTAAGAAATCGCCCACAAAAGGCATTAA
TGAAAATAGGCTGCGAGATTTTATTTCCAGCGAAAAACAAGCTGATTTTCAACCGCACTTTGTGAAAGTAGATACTACTT
TAACTGCTCAAAAAAAACCTCAAGTGTATTGGATAACGCAAAGCCAATTAGAAATTAAAGGGAATGTGAGTGGTATTCTG
CTAGCAGAAGGAAATTTAACCTTAACAGGCAAAGGGCGAATTAGCGGTGCAGTGATTACAGGTGGTTCGCTTAAGTTAGA
GGAGGGTGTGACTGTGGCTTACGGTAAAGCCGTGGTAACAAAACTCGTACGAGAATATAGCCAATGGCATTTGGTGGATA
AAAGTTGGAGTGATTTAAGTGCGCAAAATCAAAGTGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(3-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4WAH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

51.77

100

0.518

Multiple sequence alignment