Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   EL216_RS04270 Genome accession   NZ_LR134440
Coordinates   906057..906518 (-) Length   153 a.a.
NCBI ID   WP_085389436.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 901057..911518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS04245 (NCTC12228_00854) - 901753..902622 (-) 870 WP_085389440.1 DUF1853 family protein -
  EL216_RS04250 (NCTC12228_00855) - 902724..903533 (-) 810 WP_107878751.1 RNA methyltransferase -
  EL216_RS04255 (NCTC12228_00856) - 903682..904470 (+) 789 WP_085389439.1 inositol monophosphatase family protein -
  EL216_RS04260 (NCTC12228_00857) - 904616..905335 (+) 720 WP_085389438.1 S-methyl-5'-thioinosine phosphorylase -
  EL216_RS04265 (NCTC12228_00858) mog 905365..905946 (+) 582 WP_085389437.1 molybdopterin adenylyltransferase -
  EL216_RS04270 (NCTC12228_00859) comP 906057..906518 (-) 462 WP_085389436.1 type IV pilin protein Machinery gene
  EL216_RS04275 (NCTC12228_00860) - 906619..907050 (-) 432 WP_085389435.1 type IV pilin protein -
  EL216_RS04280 (NCTC12228_00861) - 907472..908638 (+) 1167 WP_085389434.1 efflux RND transporter periplasmic adaptor subunit -
  EL216_RS04285 (NCTC12228_00862) - 908650..910587 (+) 1938 WP_085389433.1 MacB family efflux pump subunit -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17003.26 Da        Isoelectric Point: 6.6277

>NTDB_id=1122854 EL216_RS04270 WP_085389436.1 906057..906518(-) (comP) [Neisseria animaloris strain NCTC12228]
MQNTQQGFTLGQLLITMAIAAILAAIAIPSYLHHIQNGNLQRAHAALLENAHFMERFYQQNRTFKQTSTTWPELPVSETN
AFCIRVQGKAQGAHDNQFTLKAVALDKNDEPRILKINESLITMVCEDSISSCKDGENVFSGNDSTDKSCSVFK

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1122854 EL216_RS04270 WP_085389436.1 906057..906518(-) (comP) [Neisseria animaloris strain NCTC12228]
ATGCAAAATACACAGCAAGGCTTCACGCTCGGCCAATTACTCATCACCATGGCGATTGCCGCCATTTTGGCGGCAATCGC
CATTCCGTCTTACCTGCATCATATTCAAAACGGCAATTTACAACGCGCCCACGCGGCTTTGTTGGAAAACGCTCATTTTA
TGGAACGTTTTTACCAACAAAATCGCACATTCAAACAAACCTCCACAACTTGGCCGGAGCTGCCGGTTTCCGAAACTAAT
GCGTTTTGTATCCGTGTTCAGGGAAAAGCACAAGGGGCGCATGATAATCAGTTTACTTTAAAAGCGGTTGCACTCGATAA
GAATGATGAACCGCGTATCTTAAAAATAAATGAATCTTTGATAACAATGGTTTGCGAAGACAGCATCAGTTCCTGCAAAG
ATGGCGAAAATGTTTTTTCAGGAAACGATTCGACGGATAAATCGTGTTCCGTATTCAAATGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

52.027

96.732

0.503
  comP Neisseria gonorrhoeae MS11

51.351

96.732

0.497
  comP Neisseria subflava NJ9703

52.083

94.118

0.49

Multiple sequence alignment