Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EL203_RS03640 Genome accession   NZ_LR134383
Coordinates   762692..763381 (-) Length   229 a.a.
NCBI ID   WP_232004057.1    Uniprot ID   -
Organism   Legionella jordanis strain NCTC11533     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 757692..768381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL203_RS03615 (NCTC11533_00742) prmC 757926..758765 (-) 840 WP_058470477.1 peptide chain release factor N(5)-glutamine methyltransferase -
  EL203_RS03620 (NCTC11533_00743) prfA 758755..759849 (-) 1095 WP_058470476.1 peptide chain release factor 1 -
  EL203_RS03625 (NCTC11533_00744) hemA 759846..761108 (-) 1263 WP_058470475.1 glutamyl-tRNA reductase -
  EL203_RS03630 (NCTC11533_00745) - 761327..761602 (+) 276 WP_058470474.1 hypothetical protein -
  EL203_RS03635 (NCTC11533_00746) - 761617..762690 (+) 1074 WP_058470473.1 RIP metalloprotease -
  EL203_RS03640 (NCTC11533_00747) comFC 762692..763381 (-) 690 WP_232004057.1 ComF family protein Machinery gene
  EL203_RS03645 (NCTC11533_00748) bioC 763426..764289 (+) 864 WP_058470472.1 malonyl-ACP O-methyltransferase BioC -
  EL203_RS03650 (NCTC11533_00749) phhA 764384..765202 (+) 819 WP_058470471.1 phenylalanine 4-monooxygenase -
  EL203_RS03655 (NCTC11533_00750) letA 765434..766096 (+) 663 WP_058470470.1 two-component system response regulator LetA Regulator
  EL203_RS03660 (NCTC11533_00751) uvrC 766197..768041 (+) 1845 WP_058470469.1 excinuclease ABC subunit UvrC -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26168.61 Da        Isoelectric Point: 8.9567

>NTDB_id=1122550 EL203_RS03640 WP_232004057.1 762692..763381(-) (comFC) [Legionella jordanis strain NCTC11533]
MTSIPQKLRLPSVCVVCQQYHRNSCAVCQICLGLFSRLTQACRYCAFPLPDDNFPICGTCSKIKPHFDAAFIAYRFEEPL
RTLLHDYKYNSALFLRKVLAKLMLDALPDSGLNSECLIPVPLHSQRLKDRGFNQSAELCKLLSRHTGIPYHLNLCRKIRP
TEAQMTLNIRKRQKNLTNAFAVEARNYKHITLVDDLLTTGNTVQQISKLFKEQGVEHIDVWCCARAVKD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1122550 EL203_RS03640 WP_232004057.1 762692..763381(-) (comFC) [Legionella jordanis strain NCTC11533]
ATGACCAGTATACCACAAAAGCTGCGTTTACCTTCAGTTTGTGTCGTTTGCCAGCAATATCATCGCAACTCCTGTGCCGT
ATGTCAGATTTGCCTGGGATTATTTTCCAGATTAACCCAAGCCTGCCGCTACTGCGCTTTTCCCTTACCAGACGATAATT
TTCCAATTTGCGGAACTTGCAGCAAAATCAAACCGCATTTTGATGCTGCTTTTATCGCCTATCGTTTTGAAGAACCTTTA
CGCACCTTGTTACATGACTACAAATACAATTCTGCTCTCTTCCTTCGCAAAGTGTTAGCGAAGCTGATGCTTGATGCCTT
ACCCGATAGCGGATTAAATAGCGAGTGTTTGATCCCTGTTCCTTTGCATTCTCAACGATTAAAGGACAGGGGTTTTAATC
AATCGGCTGAGCTTTGTAAATTGCTGTCTAGACACACAGGGATTCCCTATCATTTAAATTTATGCAGGAAAATCAGGCCA
ACAGAAGCGCAAATGACGTTAAATATTAGAAAAAGACAAAAGAATTTAACCAATGCCTTTGCCGTGGAAGCGCGCAATTA
CAAGCATATTACTCTGGTTGACGATTTGCTTACTACCGGCAACACGGTTCAACAGATTAGTAAGCTGTTTAAAGAACAAG
GGGTGGAACACATTGACGTATGGTGTTGTGCGCGTGCTGTTAAAGACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

51.111

98.253

0.502
  comFC Legionella pneumophila strain ERS1305867

51.295

84.279

0.432

Multiple sequence alignment