Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EL239_RS05825 Genome accession   NZ_LR134374
Coordinates   1340666..1341382 (+) Length   238 a.a.
NCBI ID   WP_232001743.1    Uniprot ID   -
Organism   Legionella spiritensis strain NCTC12082     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335666..1346382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL239_RS05805 (NCTC12082_01180) letA 1336736..1337380 (-) 645 WP_172597055.1 two-component system response regulator LetA Regulator
  EL239_RS05810 (NCTC12082_01181) phhA 1337466..1338284 (-) 819 WP_126338761.1 phenylalanine 4-monooxygenase -
  EL239_RS05815 (NCTC12082_01182) - 1338336..1339583 (-) 1248 WP_126338762.1 sterol desaturase family protein -
  EL239_RS05820 (NCTC12082_01183) bioC 1339778..1340626 (-) 849 WP_126338763.1 malonyl-ACP O-methyltransferase BioC -
  EL239_RS05825 (NCTC12082_01184) comFC 1340666..1341382 (+) 717 WP_232001743.1 ComF family protein Machinery gene
  EL239_RS05830 (NCTC12082_01185) - 1341370..1342443 (-) 1074 WP_126338764.1 M50 family metallopeptidase -
  EL239_RS05835 (NCTC12082_01186) - 1342457..1342735 (-) 279 WP_058482115.1 hypothetical protein -
  EL239_RS05840 (NCTC12082_01187) hemA 1342955..1344229 (+) 1275 WP_058482114.1 glutamyl-tRNA reductase -
  EL239_RS05845 (NCTC12082_01188) prfA 1344213..1345301 (+) 1089 WP_058482113.1 peptide chain release factor 1 -
  EL239_RS05850 (NCTC12082_01189) prmC 1345294..1346160 (+) 867 WP_126338765.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27189.87 Da        Isoelectric Point: 10.1939

>NTDB_id=1122403 EL239_RS05825 WP_232001743.1 1340666..1341382(+) (comFC) [Legionella spiritensis strain NCTC12082]
MRQKIASITQRFRIPAVCLLCGSYHRGCYAVCRTCEGLLTRVDHPCRYCGLPLIDESFAVCGHCIKQRPAFDRVLTAYRF
EGALRTLLHDYKYGQTLAIRTFLAKLMLDALPRQPYKPDCLIPVPLHPKRLRQRGFNQAVELAKLLAGQLNIPCYRTLCR
KTINTPAQVGLSSQQRRKNLRHSFTIGPHNFQHVTLVDDLLTTGSTASELARQFKKQGVRRVDVWCCARTAERSCYPR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1122403 EL239_RS05825 WP_232001743.1 1340666..1341382(+) (comFC) [Legionella spiritensis strain NCTC12082]
GTGCGCCAGAAAATCGCAAGTATAACACAACGTTTTCGAATCCCTGCCGTTTGTCTGTTGTGCGGTAGCTATCATCGCGG
ATGTTATGCCGTGTGCCGAACCTGTGAAGGGTTATTGACACGCGTCGACCACCCATGTCGATATTGCGGGCTGCCCCTGA
TTGATGAATCATTTGCAGTATGTGGTCATTGTATCAAACAGCGCCCGGCCTTTGACAGGGTTCTGACGGCGTATCGTTTT
GAAGGGGCATTGCGCACCCTCCTCCATGATTATAAATACGGCCAGACTCTGGCTATACGCACGTTCCTGGCCAAACTGAT
GCTGGACGCCTTGCCTCGGCAACCTTATAAACCTGATTGTCTGATTCCGGTACCTCTCCACCCCAAACGACTACGGCAGC
GAGGTTTTAATCAAGCCGTCGAGTTAGCCAAACTGTTAGCCGGACAACTGAATATACCCTGTTACCGCACTCTGTGCCGC
AAAACCATCAACACGCCGGCGCAAGTTGGGTTAAGCAGCCAACAGCGCCGCAAAAATCTGCGCCACTCCTTTACTATAGG
GCCGCATAACTTTCAGCACGTCACTCTGGTAGATGACTTGTTAACAACCGGCAGTACCGCCAGCGAACTGGCCCGGCAAT
TTAAAAAACAGGGCGTACGGCGTGTCGATGTCTGGTGTTGCGCGAGAACTGCTGAAAGATCCTGTTATCCCAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

51.709

98.319

0.508
  comFC Legionella pneumophila strain ERS1305867

55.026

79.412

0.437

Multiple sequence alignment