Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   EL239_RS04645 Genome accession   NZ_LR134374
Coordinates   1079298..1079804 (-) Length   168 a.a.
NCBI ID   WP_058483009.1    Uniprot ID   -
Organism   Legionella spiritensis strain NCTC12082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1074298..1084804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL239_RS04630 (NCTC12082_00942) aroB 1075439..1076545 (-) 1107 WP_126338539.1 3-dehydroquinate synthase -
  EL239_RS04635 (NCTC12082_00943) aroK 1076532..1077059 (-) 528 WP_058482981.1 shikimate kinase AroK -
  EL239_RS04640 (NCTC12082_00944) pilQ 1077147..1079288 (-) 2142 WP_058482982.1 type IV pilus secretin PilQ Machinery gene
  EL239_RS04645 (NCTC12082_00945) pilP 1079298..1079804 (-) 507 WP_058483009.1 pilus assembly protein PilP Machinery gene
  EL239_RS04650 (NCTC12082_00946) pilO 1079819..1080439 (-) 621 WP_126338541.1 type 4a pilus biogenesis protein PilO Machinery gene
  EL239_RS04655 (NCTC12082_00947) pilN 1080436..1081014 (-) 579 WP_058482984.1 PilN domain-containing protein Machinery gene
  EL239_RS04660 (NCTC12082_00948) pilM 1081019..1082083 (-) 1065 WP_126338543.1 pilus assembly protein PilM Machinery gene
  EL239_RS04665 (NCTC12082_00949) - 1082428..1083546 (+) 1119 WP_126338545.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18776.90 Da        Isoelectric Point: 10.2966

>NTDB_id=1122392 EL239_RS04645 WP_058483009.1 1079298..1079804(-) (pilP) [Legionella spiritensis strain NCTC12082]
MIFSILIPVLMTLALASCSSSADSELSRYINKIKSRKARPIEPLPSFKPLPKFAYPDIDTRRSPFKPKEIKASEDKYAPN
TNRSKQPLENYPLDSLKFVGILKQGPTIWALVSEPGGEIARVKPGDYMGQNYGKVISITNQLLKLEETVQIAGKWKKRIT
TININAGE

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1122392 EL239_RS04645 WP_058483009.1 1079298..1079804(-) (pilP) [Legionella spiritensis strain NCTC12082]
ATGATATTTTCTATACTGATTCCAGTCCTCATGACCCTGGCGCTGGCCTCATGCTCTTCTTCCGCGGATTCGGAATTGTC
GCGCTATATTAATAAAATCAAATCAAGAAAGGCGAGGCCCATTGAGCCGCTGCCATCATTTAAGCCGTTGCCGAAATTTG
CCTATCCGGATATTGATACGCGCCGCAGTCCCTTTAAGCCAAAGGAAATCAAGGCAAGCGAAGATAAATACGCTCCCAAC
ACGAACCGCTCCAAACAACCTCTGGAAAACTATCCTCTGGATTCCCTGAAATTTGTCGGCATTTTAAAACAGGGTCCTAC
CATTTGGGCGCTTGTCAGTGAGCCGGGAGGGGAGATTGCCCGAGTCAAACCGGGTGATTATATGGGGCAGAATTATGGTA
AGGTCATAAGTATTACCAATCAGTTACTCAAACTGGAAGAGACCGTACAAATTGCGGGCAAGTGGAAAAAACGCATTACC
ACTATCAATATAAACGCGGGTGAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

57.237

90.476

0.518

Multiple sequence alignment