Detailed information NTG1122345

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: EL158_RS00370
• Genome accession: NZ_LR134372
• Coordinates: 73074..74480 (-)
• Length: 468 a.a.
• NCBI ID: WP_027304351.1
• Uniprot ID: -
• Organism: Campylobacter upsaliensis strain NCTC11541
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 68074..79480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL158_RS00350 (NCTC11541_00075)	ctsF	69129..70310 (-)	1182	WP_027304347.1	type II secretion system F family protein	Machinery gene
EL158_RS00355 (NCTC11541_00076)	ctsE	70307..71914 (-)	1608	WP_034956026.1	GspE/PulE family protein	Machinery gene
EL158_RS00360 (NCTC11541_00077)	-	71911..72477 (-)	567	WP_027304349.1	CDC27 family protein	-
EL158_RS00365 (NCTC11541_00078)	-	72479..73081 (-)	603	WP_027304350.1	transformation system protein	-
EL158_RS00370 (NCTC11541_00079)	ctsD	73074..74480 (-)	1407	WP_027304351.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
EL158_RS00375 (NCTC11541_00080)	-	74458..74718 (-)	261	WP_179975631.1	transformation system protein	-
EL158_RS00380 (NCTC11541_00081)	nifJ	74754..78317 (-)	3564	WP_027304352.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-

Sequence

Protein

• Length: 468 a.a.
• Molecular weight: 52645.30 Da
• Isoelectric Point: 5.0995

>NTDB_id=1122345 EL158_RS00370 WP_027304351.1 73074..74480(-) (ctsD) [Campylobacter upsaliensis strain NCTC11541]
MLRFLLINLFFCSIFYGMDCKKRLFDIHIKESLSIEEALDELASYCTFSIVVKDELAKNELGKMQKSLYISQMTLEEIFK
LLLKENNLNYEFDGKILSIWGISTQIFKLSYITSIREGQSIIKASVDSKPRQNENDLSDESDDNMIKSMEKFDFWQNIEK
EITALLEAYGEVKMPIINANAGIIIVTGTPIQLKKIGEYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFA
STTQNGQNSFIQLQSGQGFVKNLGLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESSKGTE
NGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRTIAPDTIQKKLSTVVSMENNQTLI
LGGLISHNQIKEASEVNFLSKIPLLGLLFSGDETSSNSTEIVFIITPSIVDKQMGVLSLKDLGFRHYE

Nucleotide

• Length: 1407 bp

>NTDB_id=1122345 EL158_RS00370 WP_027304351.1 73074..74480(-) (ctsD) [Campylobacter upsaliensis strain NCTC11541]
ATGCTAAGATTTTTATTGATTAATTTGTTTTTTTGTTCGATTTTTTATGGTATGGACTGCAAAAAAAGACTTTTTGATAT
TCACATTAAAGAAAGTTTAAGTATAGAAGAAGCACTTGATGAGCTTGCGAGCTATTGCACTTTTAGCATAGTTGTTAAGG
ATGAATTGGCTAAAAACGAACTAGGAAAAATGCAAAAAAGTCTTTACATTAGCCAAATGACTTTGGAGGAAATTTTTAAG
CTTTTGCTGAAAGAAAATAATTTAAATTATGAATTCGATGGCAAGATTTTAAGCATTTGGGGAATTTCAACGCAAATTTT
TAAATTAAGTTATATCACTTCTATTCGTGAAGGACAAAGCATTATTAAGGCTTCTGTGGATTCTAAGCCCAGACAAAATG
AAAATGATTTAAGTGATGAGAGTGATGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATAGAAAAA
GAAATCACTGCTTTATTAGAAGCTTATGGTGAGGTAAAAATGCCTATTATCAATGCAAATGCTGGCATTATCATCGTTAC
AGGCACACCCATACAGCTTAAAAAGATAGGAGAATATATCACTAAGCTTGAAAATAGACTTAAAAAACAAGTGATTATTG
ATGTTAGCATTATCGCTGTGAATTTAAATGAAAATCACTCAAGCGGCATTAATTGGCAAAATTTCAATCTCGATTTTGCC
AGCACTACGCAAAATGGGCAAAATTCTTTTATCCAGCTTCAAAGTGGGCAGGGTTTTGTGAAAAATTTAGGTTTAAGGGC
GAATATTAATTTTAATTCTGTTTTGAATTTTCTTTCGCAAAATGGCAAAACTCAGGTTCTTTCAAGTCCTAAACTTATGG
CTTTAAATAATCAACAAGCTATCATTTCGGTAGGTGATACGATCAATTACCAAGTTAAAGAAAGCTCCAAAGGCACAGAA
AATGGCACAACGGTGAGTGAAAGTTTTAGCAATTATTCTATTTTTGTGGGGATTTTATTAAGCATTTTGCCTGAAATTTC
GGACGATAATAAAATTATGCTTCGCATTAATCCAAGTCTTAGTGATTTTAAATATCCTCAAGATAATCAAAGACAAAGTA
GCCCCCGCACCATAGCACCTGATACCATACAAAAAAAGCTATCCACAGTCGTTTCTATGGAAAATAATCAAACCTTGATC
TTAGGTGGGCTTATCTCACATAATCAAATCAAAGAAGCAAGTGAGGTCAATTTTCTCTCTAAAATTCCTTTGCTCGGGCT
TTTATTTAGTGGCGATGAGACAAGCTCAAATAGCACGGAAATTGTTTTCATCATCACGCCTAGCATAGTGGATAAGCAAA
TGGGAGTTTTAAGCCTTAAGGATTTGGGATTTAGGCATTATGAGTGA

Domains

Predicted by InterproScan.

• Secretin and TonB N terminus short domain (STN) (48-99)

• Bacterial type II and III secretion system protein (Secretin) (278-451)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	72.727	100	0.735