Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   EL158_RS00355 Genome accession   NZ_LR134372
Coordinates   70307..71914 (-) Length   535 a.a.
NCBI ID   WP_034956026.1    Uniprot ID   -
Organism   Campylobacter upsaliensis strain NCTC11541     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 65307..76914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL158_RS00335 (NCTC11541_00072) truD 65364..66485 (+) 1122 WP_027304786.1 tRNA pseudouridine(13) synthase TruD -
  EL158_RS00340 (NCTC11541_00073) - 66540..67148 (+) 609 WP_027304787.1 hypothetical protein -
  EL158_RS00345 (NCTC11541_00074) - 67264..69102 (+) 1839 WP_126361358.1 flagellin -
  EL158_RS00350 (NCTC11541_00075) ctsF 69129..70310 (-) 1182 WP_027304347.1 type II secretion system F family protein Machinery gene
  EL158_RS00355 (NCTC11541_00076) ctsE 70307..71914 (-) 1608 WP_034956026.1 GspE/PulE family protein Machinery gene
  EL158_RS00360 (NCTC11541_00077) - 71911..72477 (-) 567 WP_027304349.1 CDC27 family protein -
  EL158_RS00365 (NCTC11541_00078) - 72479..73081 (-) 603 WP_027304350.1 transformation system protein -
  EL158_RS00370 (NCTC11541_00079) ctsD 73074..74480 (-) 1407 WP_027304351.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EL158_RS00375 (NCTC11541_00080) - 74458..74718 (-) 261 WP_179975631.1 transformation system protein -

Sequence

Protein


Download         Length: 535 a.a.        Molecular weight: 61299.24 Da        Isoelectric Point: 6.1030

>NTDB_id=1122344 EL158_RS00355 WP_034956026.1 70307..71914(-) (ctsE) [Campylobacter upsaliensis strain NCTC11541]
MMEFLKNLGFDKEAKEGFEDENLRHFLFELYLKNELDLNLLFVNLGVKSEDFLRALAKYLDLEFVELKDIDENLCDSFAF
SLLWKNQILPLQKDDESIFILSSKPINLELLSKIEHLFRSKFIKNALCDIYSLNQNLNKLYIKQKLKELSSNLKQELNAN
SKENEQSGVSLLFNFILQEALKLRASDVHIESLENEALIRFRVDGVLRLFCVLEEQLYQALIFHIKLLAHLNVAQSRKAQ
DGSFNKNYEGVEFDFRISTLPLQKGESVVLRILRQDLELLSLENLHFSKQNLALITKNIQKPFGMILLTGPTGSGKSTTL
YACLKSLACVEKKIITAEDPIEYKMPQIQQIALNSKAGLDFSNALRAILRQDPDIIMVGEIRDEESLDIALKGAQTGHLI
LSTLHTNDALSTIERLLDMRAKPYLIASSLNLIIAQRLARRLCPYCKIQKLEDEEVFYEAKGCEKCHFSGFWGRELLEEC
LELDEGLKELIRKNASKNELLTYARKQGFLTMFELGLKKAKSGIISFNELMRVVG

Nucleotide


Download         Length: 1608 bp        

>NTDB_id=1122344 EL158_RS00355 WP_034956026.1 70307..71914(-) (ctsE) [Campylobacter upsaliensis strain NCTC11541]
ATGATGGAATTTTTAAAAAATTTAGGTTTTGACAAAGAAGCAAAAGAAGGCTTTGAAGATGAGAATTTGAGGCATTTTTT
ATTTGAGCTTTATTTAAAAAATGAGCTTGATTTAAATTTGCTTTTTGTCAATTTAGGCGTGAAAAGTGAAGATTTTTTAA
GAGCTTTAGCAAAGTATTTAGATTTAGAATTTGTAGAATTGAAAGATATTGATGAAAATTTGTGTGATTCTTTTGCCTTT
TCTTTGCTTTGGAAAAATCAAATTTTACCCTTACAAAAAGATGATGAAAGTATCTTTATCCTCTCTTCTAAACCCATAAA
TTTGGAGCTTTTAAGTAAAATAGAGCATCTTTTTCGCTCCAAATTTATCAAAAATGCACTTTGCGATATTTATTCCTTAA
ATCAAAATTTAAATAAGCTTTACATTAAGCAAAAATTAAAAGAGTTAAGTAGCAATTTAAAACAAGAATTAAATGCAAAT
TCTAAAGAAAACGAGCAAAGTGGCGTGAGTTTGCTTTTTAATTTTATCTTGCAAGAGGCTTTGAAATTAAGAGCAAGCGA
TGTGCATATAGAAAGTTTGGAAAATGAAGCCTTGATTCGTTTTCGTGTCGATGGGGTGTTGCGTCTTTTTTGTGTTTTGG
AGGAGCAGCTTTATCAGGCTTTGATTTTTCACATTAAACTTTTGGCACATTTAAATGTCGCCCAAAGCAGAAAAGCACAA
GATGGGAGTTTTAATAAGAATTACGAGGGCGTAGAATTTGACTTTCGTATCTCAACCTTACCTTTGCAAAAGGGCGAAAG
TGTGGTGCTTAGAATTTTAAGGCAGGATTTGGAGCTTTTAAGCCTTGAAAATTTGCATTTTTCTAAGCAAAATTTAGCCT
TAATTACAAAAAATATCCAAAAACCTTTTGGTATGATTTTACTCACAGGACCCACAGGCAGCGGTAAAAGCACGACTTTA
TACGCTTGTCTAAAAAGTCTTGCTTGTGTGGAGAAAAAAATCATTACCGCAGAAGATCCCATAGAATATAAAATGCCTCA
AATTCAACAAATCGCACTTAATTCTAAAGCAGGGCTTGATTTTAGCAATGCTTTAAGGGCGATTTTAAGGCAGGATCCTG
ATATCATTATGGTCGGTGAAATCCGCGATGAAGAAAGTCTTGATATAGCTTTAAAAGGTGCGCAAACAGGACATTTAATC
CTTAGCACACTCCATACAAATGATGCCCTTTCTACCATAGAACGCTTGCTTGATATGAGAGCAAAGCCCTATTTAATAGC
CTCTTCGCTTAATCTCATCATCGCTCAACGCCTTGCAAGAAGGCTTTGTCCCTATTGTAAAATACAAAAGCTTGAAGATG
AGGAAGTATTTTACGAGGCTAAAGGCTGTGAAAAGTGCCATTTTAGTGGCTTTTGGGGGAGGGAGTTGCTAGAAGAGTGT
TTGGAGCTTGATGAGGGTTTAAAAGAGCTAATTCGTAAAAATGCTAGCAAAAATGAGCTTTTAACTTACGCTAGAAAACA
AGGCTTTTTAACGATGTTTGAGCTAGGACTTAAAAAGGCAAAAAGTGGCATAATAAGTTTTAATGAGCTTATGAGGGTAG
TGGGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(43-144)

Type II/IV secretion system protein (T2SSE)

(175-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

53.906

95.701

0.516

Multiple sequence alignment