Detailed information NTG1122343

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: EL158_RS00350
• Genome accession: NZ_LR134372
• Coordinates: 69129..70310 (-)
• Length: 393 a.a.
• NCBI ID: WP_027304347.1
• Uniprot ID: A0A3S4UQP3
• Organism: Campylobacter upsaliensis strain NCTC11541
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 64129..75310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL158_RS00330 (NCTC11541_00071)	-	64580..65395 (+)	816	WP_027304785.1	thiamine-phosphate kinase	-
EL158_RS00335 (NCTC11541_00072)	truD	65364..66485 (+)	1122	WP_027304786.1	tRNA pseudouridine(13) synthase TruD	-
EL158_RS00340 (NCTC11541_00073)	-	66540..67148 (+)	609	WP_027304787.1	hypothetical protein	-
EL158_RS00345 (NCTC11541_00074)	-	67264..69102 (+)	1839	WP_126361358.1	flagellin	-
EL158_RS00350 (NCTC11541_00075)	ctsF	69129..70310 (-)	1182	WP_027304347.1	type II secretion system F family protein	Machinery gene
EL158_RS00355 (NCTC11541_00076)	ctsE	70307..71914 (-)	1608	WP_034956026.1	GspE/PulE family protein	Machinery gene
EL158_RS00360 (NCTC11541_00077)	-	71911..72477 (-)	567	WP_027304349.1	CDC27 family protein	-
EL158_RS00365 (NCTC11541_00078)	-	72479..73081 (-)	603	WP_027304350.1	transformation system protein	-
EL158_RS00370 (NCTC11541_00079)	ctsD	73074..74480 (-)	1407	WP_027304351.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
EL158_RS00375 (NCTC11541_00080)	-	74458..74718 (-)	261	WP_179975631.1	transformation system protein	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 44951.64 Da
• Isoelectric Point: 9.8080

>NTDB_id=1122343 EL158_RS00350 WP_027304347.1 69129..70310(-) (ctsF) [Campylobacter upsaliensis strain NCTC11541]
MRIYELYYLKNQQKLKKIIKAKNLNTAQTMALKQNLQIISLKELKKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNL
MSENSSKHLKDAAKELSVNLNSGQSLSVAFSNLALNLNLSELSLIKMGEKTGNLAHIFSQIAELRTKLILNKKRFKKAIH
YPCLVFLALFGAFLFLMFFVVPEFLDIFESLGANLPLMTQILLNIYVFLSENYLSLICVFVGFLSGFIVIYKKSVKFAFW
VDLMLLKFPFFSRFILYHQNYYFFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFKQIELSLGQGLELSLAFKKAEIF
DELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLEPLMTLLVGILVLFLALGIFLPMWELSSGV

Nucleotide

• Length: 1182 bp

>NTDB_id=1122343 EL158_RS00350 WP_027304347.1 69129..70310(-) (ctsF) [Campylobacter upsaliensis strain NCTC11541]
GTGAGAATTTATGAGCTTTATTATCTTAAAAATCAGCAAAAATTAAAGAAAATCATCAAGGCGAAAAATCTTAACACCGC
CCAAACTATGGCTTTGAAACAAAATTTGCAAATTATAAGCTTAAAGGAACTTAAAAAGCAAAGTAGGATTAAGATTAGCG
ATACGCTTTTTTGTGCTTTTTTTAAAGAATTTGCCCTCTTGCTTAATGCGGGATTAAGCATTAAGGAAGCTTTAAATTTG
ATGAGTGAAAACTCTAGCAAACATTTAAAAGACGCGGCAAAAGAATTAAGTGTGAATTTAAATTCTGGGCAGAGTTTAAG
TGTGGCATTTAGCAATTTAGCGTTAAATTTAAACTTGAGCGAATTAAGCCTCATTAAAATGGGCGAAAAGACGGGAAATT
TGGCACATATTTTTTCTCAAATTGCAGAATTAAGAACAAAGCTGATTTTAAACAAAAAGCGTTTTAAAAAGGCGATTCAC
TATCCTTGTTTAGTTTTTTTGGCACTTTTTGGGGCGTTTTTATTTTTAATGTTTTTTGTTGTACCTGAATTTTTGGACAT
TTTTGAAAGTTTGGGAGCAAATTTGCCCTTAATGACGCAAATTCTACTTAATATTTATGTATTTTTAAGTGAGAATTATT
TGTCTTTGATTTGCGTTTTTGTAGGCTTTTTGAGTGGATTTATTGTCATTTATAAAAAAAGTGTCAAATTTGCTTTTTGG
GTGGATTTGATGCTTTTAAAGTTTCCTTTTTTCTCGCGTTTTATTCTTTATCATCAAAATTATTATTTTTTTATGATTTT
CTCTTTACTTTTACAAAGCGGTAATGCCCTCTCACAAGCCTTTCATTTGGCAAGTTCTAGTGTGGAAAATAAATTTTTAA
AAGAGAAATTTAAGCAGATCGAGCTTTCTTTGGGGCAGGGATTAGAGCTTTCTTTAGCTTTTAAAAAAGCGGAGATTTTT
GATGAGCTTGTCATTTCTTTACTTCATAGTGCGATGAAAAGTGGAACGCTAGATCTTCTAAGTGCTAAAATTGCCCATTT
TTACGAAGAAAAGCAAGAGGATTTTATTGAGATATTTTTAAAATTCTTAGAGCCCTTGATGACTTTGCTTGTGGGAATTT
TGGTTTTATTTTTAGCTTTAGGGATTTTTTTGCCGATGTGGGAGCTAAGTAGTGGAGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (266-385)

• Type II secretion system (T2SS), protein F (T2SSF) (60-182)

3D structure

• AlphaFold DB: A0A3S4UQP3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	51.654	100	0.517