Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL148_RS07770 Genome accession   NZ_LR134364
Coordinates   360927..361169 (+) Length   80 a.a.
NCBI ID   WP_231087427.1    Uniprot ID   -
Organism   [Haemophilus] ducreyi strain NCTC11483     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 355927..366169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL148_RS01790 (NCTC11483_00375) rpsC 356001..356705 (-) 705 WP_064082475.1 30S ribosomal protein S3 -
  EL148_RS01795 (NCTC11483_00376) rplV 356723..357055 (-) 333 WP_064082474.1 50S ribosomal protein L22 -
  EL148_RS01800 (NCTC11483_00377) rpsS 357066..357341 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  EL148_RS01805 (NCTC11483_00378) rplB 357371..358192 (-) 822 WP_064082473.1 50S ribosomal protein L2 -
  EL148_RS01810 (NCTC11483_00379) rplW 358213..358518 (-) 306 WP_010945719.1 50S ribosomal protein L23 -
  EL148_RS01815 (NCTC11483_00380) rplD 358515..359117 (-) 603 WP_010945720.1 50S ribosomal protein L4 -
  EL148_RS01820 (NCTC11483_00381) rplC 359133..359759 (-) 627 WP_010945721.1 50S ribosomal protein L3 -
  EL148_RS01825 (NCTC11483_00382) rpsJ 359785..360096 (-) 312 WP_064082472.1 30S ribosomal protein S10 -
  EL148_RS07765 (NCTC11483_00383) sxy/tfoX 360614..360964 (+) 351 WP_232008222.1 TfoX/Sxy family protein Regulator
  EL148_RS07770 sxy/tfoX 360927..361169 (+) 243 WP_231087427.1 TfoX/Sxy family DNA transformation protein Regulator
  EL148_RS01835 (NCTC11483_00384) fumC 361323..362717 (+) 1395 WP_064082471.1 class II fumarate hydratase -
  EL148_RS01840 (NCTC11483_00385) murJ 362831..364399 (-) 1569 WP_064082470.1 murein biosynthesis integral membrane protein MurJ -
  EL148_RS01845 (NCTC11483_00386) rpsT 364760..365023 (+) 264 WP_010945727.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 9351.02 Da        Isoelectric Point: 8.4367

>NTDB_id=1122308 EL148_RS07770 WP_231087427.1 360927..361169(+) (sxy/tfoX) [[Haemophilus] ducreyi strain NCTC11483]
MLELILIPSTVDEFKQVGETKAFVRLIQQGFEVNQLLLFKLYGALQHKYIYMLSLEEKKRLLEQADSALYDAGLRKRFTV

Nucleotide


Download         Length: 243 bp        

>NTDB_id=1122308 EL148_RS07770 WP_231087427.1 360927..361169(+) (sxy/tfoX) [[Haemophilus] ducreyi strain NCTC11483]
TTGCTCGAGTTAATATTAATACCGTCTACCGTCGATGAATTTAAACAGGTTGGGGAAACAAAGGCGTTTGTTAGGCTTAT
CCAACAAGGATTTGAAGTCAATCAATTACTTTTATTTAAATTATATGGTGCATTACAGCATAAATATATTTATATGCTTT
CATTAGAAGAGAAAAAAAGGTTACTGGAGCAAGCAGACTCTGCACTCTATGACGCGGGGCTTAGAAAAAGATTTACGGTC
TAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(9-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

64.789

88.75

0.575
  sxy/tfoX Actinobacillus suis H91-0380

63.768

86.25

0.55
  sxy/tfoX Glaesserella parasuis strain SC1401

47.222

90

0.425

Multiple sequence alignment