Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EL148_RS02800 Genome accession   NZ_LR134364
Coordinates   538762..539439 (-) Length   225 a.a.
NCBI ID   WP_172592915.1    Uniprot ID   -
Organism   [Haemophilus] ducreyi strain NCTC11483     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 533762..544439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL148_RS02780 (NCTC11483_00581) mutL 534135..535931 (+) 1797 WP_064082175.1 DNA mismatch repair endonuclease MutL -
  EL148_RS02785 (NCTC11483_00582) miaA 535995..536936 (+) 942 WP_064082176.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  EL148_RS02790 (NCTC11483_00583) hfq 536999..537304 (+) 306 WP_064082177.1 RNA chaperone Hfq -
  EL148_RS02795 (NCTC11483_00584) hflX 537382..538692 (+) 1311 WP_232008224.1 ribosome rescue GTPase HflX -
  EL148_RS02800 (NCTC11483_00585) crp 538762..539439 (-) 678 WP_172592915.1 cAMP-activated global transcriptional regulator CRP Regulator
  EL148_RS02805 (NCTC11483_00586) - 539530..539748 (-) 219 WP_010944700.1 YheU family protein -
  EL148_RS02810 (NCTC11483_00587) slmA 539757..540365 (-) 609 WP_064082180.1 nucleoid occlusion factor SlmA -
  EL148_RS02815 (NCTC11483_00588) dut 540469..540924 (-) 456 WP_041603414.1 dUTP diphosphatase -
  EL148_RS02820 (NCTC11483_00589) coaBC 540911..542155 (-) 1245 WP_074647935.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EL148_RS02825 (NCTC11483_00590) radC 542368..543039 (+) 672 WP_064082182.1 RadC family protein -
  EL148_RS02830 (NCTC11483_00591) rpmB 543200..543436 (+) 237 WP_074647932.1 50S ribosomal protein L28 -
  EL148_RS02835 (NCTC11483_00592) rpmG 543448..543618 (+) 171 WP_010944694.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25244.07 Da        Isoelectric Point: 6.2235

>NTDB_id=1122297 EL148_RS02800 WP_172592915.1 538762..539439(-) (crp) [[Haemophilus] ducreyi strain NCTC11483]
MQDISISTPRLDGEVSPPPSIHDPAVEWFLTHCHIHRYPSKYTLIHAGEEANSLFYIVSGSVAVFIKDDEGKEMILSHLG
QGEFVGEISLFEENTQPRTAWVKTKDACEIAEISYEKFKQLVHVNPDILMYLAAQMACRLRQTSRQVSNLAFLDVTGRIA
QTLMNLAKMPEAMTHPEGMQIKITRQEIGQMVGCSRETVGRILKMLEDEGLISAHGKTIVVYGTR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1122297 EL148_RS02800 WP_172592915.1 538762..539439(-) (crp) [[Haemophilus] ducreyi strain NCTC11483]
ATGCAAGATATTTCTATTTCTACACCTCGGCTTGATGGAGAGGTTTCCCCGCCTCCTTCGATTCATGATCCTGCGGTAGA
ATGGTTTTTAACGCACTGCCATATTCATCGCTATCCTTCAAAATATACTTTAATTCACGCAGGTGAAGAAGCAAATTCCC
TGTTTTATATTGTCAGTGGTTCTGTGGCTGTCTTTATTAAAGACGATGAAGGCAAAGAAATGATTTTATCACATCTAGGA
CAAGGAGAGTTTGTCGGCGAAATTAGTTTATTTGAAGAAAATACACAGCCAAGAACCGCTTGGGTAAAAACGAAAGATGC
TTGCGAAATTGCAGAAATTTCTTATGAAAAATTTAAACAATTAGTACATGTAAATCCTGACATTTTAATGTATCTTGCTG
CTCAAATGGCTTGTCGCTTACGTCAAACTTCGCGTCAAGTAAGTAATCTTGCTTTTTTAGATGTTACCGGTCGTATTGCG
CAAACATTGATGAATTTAGCCAAAATGCCTGAAGCAATGACGCATCCTGAAGGAATGCAAATTAAAATTACTCGCCAAGA
AATTGGGCAAATGGTGGGCTGCTCACGTGAAACTGTGGGACGCATTTTAAAAATGTTAGAAGATGAAGGTTTAATCTCAG
CCCATGGGAAGACCATAGTTGTTTATGGTACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(37-123)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(157-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

75.369

90.222

0.68
  crp Haemophilus influenzae Rd KW20

73.399

90.222

0.662
  crp Acinetobacter baumannii D1279779

49.5

88.889

0.44

Multiple sequence alignment