Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL167_RS12635 Genome accession   NZ_LR134360
Coordinates   2619359..2619880 (-) Length   173 a.a.
NCBI ID   WP_047132291.1    Uniprot ID   -
Organism   Staphylococcus condimenti strain NCTC13827     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2614359..2624880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL167_RS12610 (NCTC13827_02603) - 2615517..2616986 (-) 1470 WP_047132287.1 ABC transporter ATP-binding protein -
  EL167_RS12615 (NCTC13827_02604) - 2616999..2617694 (-) 696 WP_047132288.1 energy-coupling factor transporter transmembrane component T -
  EL167_RS12620 (NCTC13827_02605) - 2617694..2618278 (-) 585 WP_047132289.1 MptD family putative ECF transporter S component -
  EL167_RS12625 (NCTC13827_02606) - 2618509..2618727 (-) 219 WP_047132290.1 hypothetical protein -
  EL167_RS12630 (NCTC13827_02607) rpsR 2619060..2619302 (-) 243 WP_012664058.1 30S ribosomal protein S18 -
  EL167_RS12635 (NCTC13827_02608) ssbA 2619359..2619880 (-) 522 WP_047132291.1 single-stranded DNA-binding protein Machinery gene
  EL167_RS12640 (NCTC13827_02609) rpsF 2619903..2620199 (-) 297 WP_047132292.1 30S ribosomal protein S6 -
  EL167_RS12645 (NCTC13827_02610) - 2620345..2621382 (-) 1038 WP_052766760.1 thermonuclease family protein -
  EL167_RS12650 (NCTC13827_02611) - 2621540..2621797 (+) 258 WP_047132293.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  EL167_RS12655 (NCTC13827_02612) - 2621791..2622129 (+) 339 WP_047132294.1 type II toxin-antitoxin system PemK/MazF family toxin -
  EL167_RS12660 (NCTC13827_02613) argF 2622382..2623386 (+) 1005 WP_063164631.1 ornithine carbamoyltransferase -
  EL167_RS12665 (NCTC13827_02614) - 2623587..2624354 (+) 768 WP_047131968.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19174.84 Da        Isoelectric Point: 5.2149

>NTDB_id=1122265 EL167_RS12635 WP_047132291.1 2619359..2619880(-) (ssbA) [Staphylococcus condimenti strain NCTC13827]
MLNRVVLVGRLTRDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGGQQSGGGNQFQDYGQSYGGQQQGQNTSSYQNQNSSKSGQFDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1122265 EL167_RS12635 WP_047132291.1 2619359..2619880(-) (ssbA) [Staphylococcus condimenti strain NCTC13827]
ATGCTTAACAGAGTTGTATTGGTAGGACGTTTAACTCGAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACCCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAACAATTATTTGTTTAAAGGCAGTCTAGCTGGCGTTGACGGTCGCTTGCAATCACGC
AGTTACGAAAACCAAGAAGGACGTCGTATTTTTGTGACAGAAGTTGTGTGTGACAGCGTTCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATGGCGGCCAACAATCTGGAGGAGGCAATCAATTCCAAGATTACGGTCAAAGTTACGGTGGACAAC
AACAAGGTCAAAATACGTCATCTTATCAAAACCAAAATTCATCAAAATCTGGACAATTTGATAATCCATTTGCAAATGCA
AACGGACCGATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

63.584

0.364

Multiple sequence alignment