Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   EL177_RS06275 Genome accession   NZ_LR134358
Coordinates   1061242..1061715 (-) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13484     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1056242..1066715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL177_RS06250 (NCTC13484_01108) yaaA 1057344..1058123 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  EL177_RS06255 (NCTC13484_01109) dapC 1058279..1059466 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  EL177_RS06260 (NCTC13484_01110) dut 1059538..1059990 (-) 453 WP_003701071.1 dUTP diphosphatase -
  EL177_RS06265 - 1060156..1060867 (+) 712 Protein_1090 AzlC family ABC transporter permease -
  EL177_RS06270 (NCTC13484_01113) - 1060864..1061172 (+) 309 WP_025456241.1 AzlD family protein -
  EL177_RS06275 (NCTC13484_01114) pilL 1061242..1061715 (-) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  EL177_RS06280 (NCTC13484_01115) pilK 1061717..1062328 (-) 612 WP_047923832.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL177_RS06285 (NCTC13484_01116) pilJ 1062307..1063248 (-) 942 WP_047923833.1 PilW family protein Machinery gene
  EL177_RS06290 (NCTC13484_01117) pilI 1063245..1063853 (-) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  EL177_RS06295 (NCTC13484_01118) pilH 1063885..1064547 (-) 663 WP_047923835.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL177_RS06305 (NCTC13484_01119) dnaB 1064855..1066261 (-) 1407 WP_047923824.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=1122205 EL177_RS06275 WP_012503482.1 1061242..1061715(-) (pilL) [Neisseria gonorrhoeae strain NCTC13484]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1122205 EL177_RS06275 WP_012503482.1 1061242..1061715(-) (pilL) [Neisseria gonorrhoeae strain NCTC13484]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854

Multiple sequence alignment