Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EL177_RS06295 Genome accession   NZ_LR134358
Coordinates   1063885..1064547 (-) Length   220 a.a.
NCBI ID   WP_047923835.1    Uniprot ID   A0AAX2TSQ4
Organism   Neisseria gonorrhoeae strain NCTC13484     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058885..1069547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL177_RS06260 (NCTC13484_01110) dut 1059538..1059990 (-) 453 WP_003701071.1 dUTP diphosphatase -
  EL177_RS06265 - 1060156..1060867 (+) 712 Protein_1090 AzlC family ABC transporter permease -
  EL177_RS06270 (NCTC13484_01113) - 1060864..1061172 (+) 309 WP_025456241.1 AzlD family protein -
  EL177_RS06275 (NCTC13484_01114) pilL 1061242..1061715 (-) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  EL177_RS06280 (NCTC13484_01115) pilK 1061717..1062328 (-) 612 WP_047923832.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL177_RS06285 (NCTC13484_01116) pilJ 1062307..1063248 (-) 942 WP_047923833.1 PilW family protein Machinery gene
  EL177_RS06290 (NCTC13484_01117) pilI 1063245..1063853 (-) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  EL177_RS06295 (NCTC13484_01118) pilH 1063885..1064547 (-) 663 WP_047923835.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL177_RS06305 (NCTC13484_01119) dnaB 1064855..1066261 (-) 1407 WP_047923824.1 replicative DNA helicase -
  EL177_RS06315 (NCTC13484_01120) - 1066425..1067006 (+) 582 WP_047923823.1 superoxide dismutase -
  EL177_RS06325 (NCTC13484_01121) - 1067238..1067747 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EL177_RS06330 (NCTC13484_01122) - 1068078..1068410 (-) 333 WP_003687908.1 hypothetical protein -
  EL177_RS06335 (NCTC13484_01123) cysT 1068591..1069427 (+) 837 WP_047923822.1 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24357.84 Da        Isoelectric Point: 9.6051

>NTDB_id=1122209 EL177_RS06295 WP_047923835.1 1063885..1064547(-) (pilH) [Neisseria gonorrhoeae strain NCTC13484]
MCTRKQQGFTLIELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NGCDFSKKGRGMLAFGDKNGNKAYDGDTKDVFLRNVVLNDTDDSRINYAFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1122209 EL177_RS06295 WP_047923835.1 1063885..1064547(-) (pilH) [Neisseria gonorrhoeae strain NCTC13484]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATGGATGTGATTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

96.364

100

0.964

Multiple sequence alignment