Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EL177_RS01030 Genome accession   NZ_LR134358
Coordinates   156807..157238 (-) Length   143 a.a.
NCBI ID   WP_269471278.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13484     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151807..162238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL177_RS01000 (NCTC13484_00177) - 151945..152313 (+) 369 WP_003689404.1 hemerythrin domain-containing protein -
  EL177_RS01005 (NCTC13484_00178) - 152358..153512 (+) 1155 WP_010358927.1 NnrS family protein -
  EL177_RS01010 (NCTC13484_00179) - 153570..154442 (-) 873 WP_003689400.1 prephenate dehydrogenase -
  EL177_RS01015 (NCTC13484_00180) - 154527..155339 (+) 813 WP_047923745.1 carbon-nitrogen hydrolase family protein -
  EL177_RS13600 - 155489..155647 (+) 159 WP_154235871.1 hypothetical protein -
  EL177_RS01020 (NCTC13484_00181) - 155621..156394 (-) 774 WP_126317750.1 opacity family porin -
  EL177_RS01030 (NCTC13484_00182) pilE 156807..157238 (-) 432 WP_269471278.1 pilin Machinery gene
  EL177_RS01035 (NCTC13484_00183) - 157393..158268 (+) 876 WP_003693582.1 DMT family transporter -
  EL177_RS01045 (NCTC13484_00185) - 158384..159589 (+) 1206 Protein_182 multidrug effflux MFS transporter -
  EL177_RS01050 (NCTC13484_00186) pheA 159628..160755 (+) 1128 WP_003695553.1 prephenate dehydratase -
  EL177_RS01055 (NCTC13484_00187) recO 160792..161535 (+) 744 WP_003695555.1 DNA repair protein RecO -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15364.09 Da        Isoelectric Point: 8.4809

>NTDB_id=1122194 EL177_RS01030 WP_269471278.1 156807..157238(-) (pilE) [Neisseria gonorrhoeae strain NCTC13484]
MPLFQGPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPADNGAAGVASPSDIKGKYVQSVTVANGVVTAEMKSDGVNKE
IKGKKLSLWGRRENGSVKWFCGQPVKRDANNANNDAVTDDTTGTKIDTKHLPSTCRDKASDAN

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1122194 EL177_RS01030 WP_269471278.1 156807..157238(-) (pilE) [Neisseria gonorrhoeae strain NCTC13484]
TTGCCGTTGTTCCAAGGTCCGGACTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGC
CGTTACCGAGTATTACCTGAATCACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCCCCTCCGACATCA
AAGGCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAA
ATCAAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCG
CGACGCCAACAACGCCAACAACGACGCCGTCACCGACGACACCACCGGCACCAAAATCGACACCAAGCACCTGCCGTCAA
CCTGCCGCGATAAGGCATCTGATGCCAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.028

100

0.72
  pilE Neisseria gonorrhoeae strain FA1090

66.429

97.902

0.65

Multiple sequence alignment