Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   EL147_RS09135 Genome accession   NZ_LR134341
Coordinates   1849746..1850747 (+) Length   333 a.a.
NCBI ID   WP_007893523.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1844746..1855747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS09110 (NCTC13786_01827) - 1845052..1845366 (+) 315 WP_007893468.1 PTS cellobiose transporter subunit IIA -
  EL147_RS09115 (NCTC13786_01828) - 1845396..1845914 (+) 519 WP_007893522.1 hypothetical protein -
  EL147_RS09120 (NCTC13786_01829) celB 1845941..1847278 (+) 1338 WP_007893472.1 PTS cellobiose transporter subunit IIC -
  EL147_RS09125 (NCTC13786_01830) - 1847341..1848429 (+) 1089 WP_007893518.1 DUF871 domain-containing protein -
  EL147_RS09130 (NCTC13786_01831) - 1848486..1849571 (-) 1086 WP_007893493.1 aminopeptidase P family protein -
  EL147_RS09135 (NCTC13786_01832) ccpA 1849746..1850747 (+) 1002 WP_007893523.1 catabolite control protein A Regulator
  EL147_RS09140 (NCTC13786_01833) - 1850793..1852256 (+) 1464 WP_007893470.1 alpha-amylase -
  EL147_RS09145 (NCTC13786_01834) - 1852332..1853330 (+) 999 WP_007893543.1 glycosyltransferase family 4 protein -
  EL147_RS09150 (NCTC13786_01835) - 1853332..1854666 (+) 1335 WP_007893529.1 glycosyltransferase family 4 protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36648.69 Da        Isoelectric Point: 5.3073

>NTDB_id=1122031 EL147_RS09135 WP_007893523.1 1849746..1850747(+) (ccpA) [Streptococcus pseudoporcinus strain NCTC13786]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKAAVSEVVDILAEKHQNIAFVSGPLIDEINGKVRLSGYKEGLKQNKLDYKEGLVFEANYSYKDGFELAQRVINSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPVVEYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKRRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1122031 EL147_RS09135 WP_007893523.1 1849746..1850747(+) (ccpA) [Streptococcus pseudoporcinus strain NCTC13786]
ATGAACACAGATGATACTATCACGATTTACGATGTTGCTCGTGAAGCTGGTGTTTCAATGGCAACTGTTAGCCGTGTTGT
AAATGGAAATAAAAATGTTAAAGAAAATACACGTAAGAAAGTATTAGAAGTTATCGATCGTTTGGATTATCGCCCTAATG
CAGTTGCTCGTGGTCTTGCAAGTAAAAAAACAACAACAGTTGGAGTAGTTATTCCTAATATTGCTAACGCCTACTTTTCA
ATCCTTGCTAAGGGAATTGACGACATTGCAGCCATGTATAAATATAACATCGTTTTAGCTTCAAGTGATGAAGACGATGA
TAAAGAAGTTAATGTTGTTAATACCTTATTTGCTAAGCAAGTTGATGGCATTATTTTTATGGGACATCATTTAACTGAAA
AAATTCGTGCAGAATTTTCACGGTCTAGAACCCCAATTGTATTAGCTGGAACTGTCGATTTAGAGCATCAGTTGCCAAGT
GTCAATATTGATTATAAAGCAGCTGTTTCTGAGGTAGTTGATATTTTAGCAGAAAAACATCAAAACATTGCTTTTGTATC
AGGGCCATTAATTGATGAAATCAATGGTAAGGTAAGACTCTCTGGCTATAAAGAAGGCTTGAAGCAAAATAAATTGGACT
ATAAAGAAGGCCTTGTTTTTGAAGCTAACTACTCTTATAAAGACGGCTTTGAGTTAGCACAAAGGGTTATCAACTCTGGG
GCAACAGCTGCCTATGTAGGGGAGGATGAACTAGCAGCAGGCTTATTAAACGGTCTCTTTGCAGCAGGCAAGAGTGTTCC
AGAAGACTTTGAAATTATTACAAGTAATGATTCCCCAGTCGTAGAATATACCCGTCCAAATCTAAGTTCAATTAGTCAAC
CTGTATATGATTTGGGTGCCGTAAGCATGCGTATGTTAACTAAAATCATGAATAAAGAAGAGTTAGAAGAAAAAGAAATT
TTGTTAAATCATGGCATTAAACGTCGTGGCACAACGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.378

100

0.784

  ccpA Streptococcus pneumoniae D39

76.877

100

0.769

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.985

99.399

0.547


Multiple sequence alignment