Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL140_RS06580 Genome accession   NZ_LR134336
Coordinates   1315118..1317076 (-) Length   652 a.a.
NCBI ID   WP_000748538.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310118..1322076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS06570 (NCTC11427_01298) - 1312704..1313870 (-) 1167 WP_000521334.1 MalY/PatB family protein -
  EL140_RS06575 (NCTC11427_01299) - 1313878..1314972 (-) 1095 WP_000031946.1 cystathionine gamma-synthase -
  EL140_RS06580 (NCTC11427_01300) amiA 1315118..1317076 (-) 1959 WP_000748538.1 peptide ABC transporter substrate-binding protein Regulator
  EL140_RS06585 (NCTC11427_01301) - 1317279..1318901 (-) 1623 WP_000064195.1 putative polysaccharide biosynthesis protein -
  EL140_RS06590 (NCTC11427_01302) - 1319007..1320452 (+) 1446 WP_000590327.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  EL140_RS06595 (NCTC11427_01303) - 1320485..1320685 (-) 201 WP_000051179.1 CsbD family protein -
  EL140_RS06600 (NCTC11427_01304) - 1320787..1321437 (-) 651 WP_000614477.1 DUF1803 domain-containing protein -
  EL140_RS06605 (NCTC11427_01305) - 1321421..1321933 (-) 513 WP_000892233.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72805.95 Da        Isoelectric Point: 4.7680

>NTDB_id=1121854 EL140_RS06580 WP_000748538.1 1315118..1317076(-) (amiA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MKKSKAKYLTLASVVLSAGILLSACGNSSSASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDEK
NVFVDGVKLAYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQISTDEFNN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1121854 EL140_RS06580 WP_000748538.1 1315118..1317076(-) (amiA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCTGGTATTCTACTGAGCGCATGTGGAAA
TTCAAGTAGCGCTTCTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTGACCAATTTGGTGGATGGGTTGATGGAAAATGACCAATACGGTAATTATGTTCCATCATTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATACGCCCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTC
AAGGCGATTGACGACCAAACAGTTCAGTACACTTTGACACGTCCAGAATCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGATTTCTTAAAATCAAAAGGGGATGACTTTGGTAAGGTAGACCCTTCTAGTATTTTGTACA
ATGGACCTTTCTTGATGAAATCTTTTGTTTCAAAATCTGTTATCGAATTCAAGAAAAATCCCAACTACTGGGATGAAAAA
AATGTCTTTGTGGATGGTGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCACGTAACTTTGTAGAAGG
AGTCTATAGCTACGCGCGTCTCTATCCAAATAGCTCAAGCTTTGAAGGCATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAATGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACTTCTAAGTCCTCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
TGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACGAAGATTATTCGTAATTTGGTTGTACCTCCAACATTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCGGACGCGCAAGATCCATACTACAATCCTGATAAAGCTAAGGCTAAATTTGCGGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTATCAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGTTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAGATATCAACAGATGAGTTTAACAAC
TCTAGCTACCTCGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGCTATCTAGATATCCTAAATGTCAATAACGGCGGTATGTTGCAAAATCTTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCGAACAAGGAGCAAGATCCAGCAAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTCAGGGTGGGACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTATCTCA
AGTTACAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55.69

100

0.563

Multiple sequence alignment