Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL140_RS01410 Genome accession   NZ_LR134336
Coordinates   260314..262275 (+) Length   653 a.a.
NCBI ID   WP_000571829.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 255314..267275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS01390 (NCTC11427_00271) rpsI 255545..255937 (+) 393 WP_000075973.1 30S ribosomal protein S9 -
  EL140_RS01395 (NCTC11427_00272) - 256168..257133 (+) 966 WP_025169028.1 hypothetical protein -
  EL140_RS01400 (NCTC11427_00273) - 257402..257914 (+) 513 WP_000624246.1 GNAT family N-acetyltransferase -
  EL140_RS01405 (NCTC11427_00274) amiA 258200..260167 (+) 1968 WP_000837399.1 peptide ABC transporter substrate-binding protein Regulator
  EL140_RS01410 (NCTC11427_00275) amiA3 260314..262275 (+) 1962 WP_000571829.1 peptide ABC transporter substrate-binding protein Regulator
  EL140_RS01415 (NCTC11427_00276) - 262467..263912 (+) 1446 WP_000091221.1 LCP family protein -
  EL140_RS01420 (NCTC11427_00277) cps4B 263914..264645 (+) 732 WP_000565325.1 capsular polysaccharide biosynthesis protein Cps4B -
  EL140_RS01425 (NCTC11427_00278) cpsC 264654..265346 (+) 693 WP_000664126.1 capsular polysaccharide biosynthesis protein CpsC -
  EL140_RS01430 (NCTC11427_00279) - 265356..266048 (+) 693 WP_001142500.1 tyrosine-protein kinase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73115.39 Da        Isoelectric Point: 4.7639

>NTDB_id=1121831 EL140_RS01410 WP_000571829.1 260314..262275(+) (amiA3) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MIEMKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDIYTKLLKEADAENKDVTKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEEESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1121831 EL140_RS01410 WP_000571829.1 260314..262275(+) (amiA3) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGATCGAAATGAAAAAAAGACTGATTGGGACAGGTCTTGTCTTAGCGACCGGGATTTTGCTTTCGGCATGTGGACAGTC
CAACACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCAACAACTTTTAACTATCTCCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTTGTAGATGGTTTGTTAGAAAATGACAGCTATGGGAACCTCGTACCTGCTCTTGCA
GAGGATTGGTCTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACGGCTGATGG
TGAGGAATACGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCCGCGGACAATAAGGGGCAAGCCATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACCAATGACTTTTCAACTGTCGGTGTCAAA
GCCTTGGATGATTACACAGTCGAGTACACTTTGACTCGACCAGAACCGTATTGGAATTCAAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATCCTTTATAACG
GTCCCTATCTGTTAAAAGATTTCACATCAAAATCTTCGATCGAATATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCTTACTTTGATGGATCAGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTCTATA
GTTTACAAGACAAGACTTCTTGGTACTTCAACTTTAACGTCAACCGCAAAACCTATAATCATACCGCTAAAACAACGGAT
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAAGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTAGTTCCTCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GATGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACGAATAAAAATGCGGTCTCTGGTATGAACTCGGTCAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGAAATGTT
GCCTTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGATCCCTTCAATGCTGAAACTGGCTTCTATCTCAAGATTTTTGGTCTTGATGCCAAGGAAGACCAAGAGC
TCATTAAGAGTTTGGGGCTCGATATCTATACGAAACTTCTAAAAGAAGCAGATGCTGAGAATAAAGATGTCACTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTTATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTGGGAATCAAGGGTGACGGAAATAATTATAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGATGAAGCCAAGGCTAAGTGGGAAGAAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.846

99.541

0.516
  amiA3 Streptococcus thermophilus LMG 18311

51.692

99.541

0.515
  amiA Streptococcus salivarius strain HSISS4

51.156

99.387

0.508

Multiple sequence alignment