Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EL130_RS07285 Genome accession   NZ_LR134320
Coordinates   1452033..1452722 (-) Length   229 a.a.
NCBI ID   WP_002288095.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1447033..1457722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS07255 (NCTC10832_01399) - 1447284..1448042 (-) 759 WP_002262204.1 inositol monophosphatase family protein -
  EL130_RS07260 (NCTC10832_01400) - 1448032..1448310 (-) 279 WP_126475491.1 UPF0223 family protein -
  EL130_RS07265 (NCTC10832_01401) spx 1448303..1448716 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  EL130_RS07270 (NCTC10832_01402) - 1448777..1449697 (-) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  EL130_RS07275 (NCTC10832_01403) truB 1449728..1450609 (-) 882 WP_002275132.1 tRNA pseudouridine(55) synthase TruB -
  EL130_RS07280 (NCTC10832_01404) scnK 1450719..1452032 (-) 1314 WP_126475492.1 sensor histidine kinase Regulator
  EL130_RS07285 (NCTC10832_01405) scnR 1452033..1452722 (-) 690 WP_002288095.1 response regulator transcription factor Regulator
  EL130_RS07295 (NCTC10832_01406) - 1452897..1453805 (+) 909 WP_002283587.1 ABC transporter ATP-binding protein -
  EL130_RS07300 (NCTC10832_01407) - 1453805..1454545 (+) 741 WP_002265501.1 ABC transporter permease -
  EL130_RS07305 (NCTC10832_01408) - 1454542..1455270 (+) 729 WP_002281273.1 ABC transporter permease -
  EL130_RS07310 (NCTC10832_01409) - 1455397..1456761 (-) 1365 WP_002298905.1 DUF438 domain-containing protein -
  EL130_RS07315 (NCTC10832_01410) - 1456761..1456994 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26218.59 Da        Isoelectric Point: 6.0486

>NTDB_id=1121439 EL130_RS07285 WP_002288095.1 1452033..1452722(-) (scnR) [Streptococcus mutans strain NCTC10832]
MNYKEKKILILDDNPEILEMVQESLNIAGFNNLTGVQSKKEALEQLGKISFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1121439 EL130_RS07285 WP_002288095.1 1452033..1452722(-) (scnR) [Streptococcus mutans strain NCTC10832]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAACAT
TGCTGGTTTTAACAACCTAACAGGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAATATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

99.127

100

0.991
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367

Multiple sequence alignment