Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   EL233_RS03190 Genome accession   NZ_LR134319
Coordinates   719726..721318 (-) Length   530 a.a.
NCBI ID   WP_013984075.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain NCTC10450     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 714726..726318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL233_RS03175 (NCTC10450_00641) - 715343..716938 (-) 1596 WP_125865873.1 response regulator -
  EL233_RS03180 (NCTC10450_00642) - 717156..718214 (+) 1059 WP_011914666.1 DUF2333 family protein -
  EL233_RS03185 (NCTC10450_00643) pilR 718258..719595 (-) 1338 WP_026006503.1 sigma-54-dependent transcriptional regulator Regulator
  EL233_RS03190 (NCTC10450_00644) pilS 719726..721318 (-) 1593 WP_013984075.1 sensor histidine kinase Regulator
  EL233_RS03195 (NCTC10450_00645) - 721308..721541 (-) 234 WP_126525955.1 PP0621 family protein -
  EL233_RS03200 (NCTC10450_00646) - 721663..722652 (-) 990 WP_013984073.1 outer membrane protein assembly factor BamD -
  EL233_RS03205 (NCTC10450_00648) rluD 722857..723831 (+) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL233_RS03210 (NCTC10450_00649) pgeF 723828..724565 (+) 738 WP_126525957.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58892.95 Da        Isoelectric Point: 7.8561

>NTDB_id=1121347 EL233_RS03190 WP_013984075.1 719726..721318(-) (pilS) [Stutzerimonas stutzeri strain NCTC10450]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIIVAVLVQSPERDLPVL
SLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSISRSEASSQYVQAGALG
TLCFAAAFLVQGLTRRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQESLAGERLA
PRCPELLKALQHWRGNPTLRPPNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQ
QTVHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1121347 EL233_RS03190 WP_013984075.1 719726..721318(-) (pilS) [Stutzerimonas stutzeri strain NCTC10450]
GTGGGCACTGAGAACCTCACCTTCTTCGGCGATCAGGGGCGGCGCATCCTTCGCCTGTATCACCTCTACCGCCTGACCAT
TGGCCTCGCCCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGATCTGCTGCAGATGAGCAATCCGCAGCTGTTTCAGT
ACGGCGCCTGGCTCTATCTGATCCTCAACATCATCGTCGCGGTGCTGGTGCAGAGCCCCGAGCGCGACCTGCCAGTGCTC
AGCCTGGCGCTGATGGACGTGATCCTGCTGTCGGGATTGTTCTATTTTGGCGGAGGAACGCCGAGCGGCATCGGCAACCT
GCTGATCGTCGCCGTCGCCATCGCCAATATTCTCCTGCGGGGGCGGGTCGGTTTCTTCATCGCCGCGGTCGCTGCCACCG
GCCTGATCTACCTGACCTTCTACCTGAGCATCAGCCGTTCCGAAGCCAGCAGCCAGTACGTCCAGGCCGGTGCGCTCGGC
ACGCTGTGCTTCGCCGCAGCCTTTCTCGTCCAGGGACTGACTCGGCGCCTGCAGGTCAGCGAGACTCTGGCCCGCCAGCG
CGCCGAGGAGGTCGCCAACCTCGAGGCCCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATCATGGTGTTGGACC
CGCAGGAGCGCGTGCTCCTGGCCAACCAGGGGGCGCTGCAGTTGCTCGGCCAGGAATCGCTGGCCGGCGAGCGCCTCGCG
CCGCGCTGCCCGGAGCTGCTCAAGGCACTGCAGCACTGGCGTGGCAATCCCACACTGCGCCCGCCGAACCTCAAGGCCAC
CCCCGGCGGACCGACGCTGCAGCCGAGTTTCGCCGCCCTGCAGCACGGCAACAAGCTCGACACTCTGGTGTTCCTCGAGG
ACATCTCGCAGATCGCCCAGAAGGCCCAGCAACTCAAGCTCGCCTCCCTCGGACGACTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCATGCTGCTCAGCTGCTACAGGAATCCGAAGAGCTGGACGGCCCGGATCGGCG
ACTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAATCTGGTCATCGAGAACGTGCTGCAGCTTTCCCGGCGCCGCC
AGGCGGAGCCCCAACTGCTGGATCTCAAATACTGGCTGCATCGCTTCGTCAGCGAATTCCGCCAGGGGCTCAGCCCGCAG
CAGACGGTTCACCTGGAAACCATCGGCAGCTCGCTGCAGACGCGCATGGACCCCAACCAGCTGACCCAGGTGCTCACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGGAGCACGATCGCGCTCAGGTCTGGCTCCGCCTGTTTCGCGACGAAG
CCAGCGATCTGCCGGTCGTTGAGGTCCTCGACGATGGGCCCGGCATCGCCGCCGAGCAGTTGCACAACGTTTTCGAACCT
TTCTTCACCACCGAGAGTAAAGGCACCGGGCTCGGGCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCGCCGAAGGCGGCAGCTGCTTCCGCATCGTCTTCGCGCACCCGCGCAAGCTGAGCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666

Multiple sequence alignment