Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL139_RS05315 Genome accession   NZ_LR134316
Coordinates   1017644..1018135 (+) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1012644..1023135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL139_RS05290 (NCTC6181_01080) trxA 1013807..1014121 (+) 315 WP_003052691.1 thioredoxin -
  EL139_RS05295 (NCTC6181_01081) mutY 1014172..1015338 (-) 1167 WP_111717553.1 A/G-specific adenine glycosylase -
  EL139_RS11605 (NCTC6181_01082) - 1015504..1015797 (+) 294 WP_003052683.1 hypothetical protein -
  EL139_RS05305 (NCTC6181_01083) - 1016453..1016773 (+) 321 WP_126442245.1 hypothetical protein -
  EL139_RS05310 (NCTC6181_01084) rpsF 1017332..1017622 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  EL139_RS05315 (NCTC6181_01085) ssbA 1017644..1018135 (+) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  EL139_RS05320 (NCTC6181_01086) rpsR 1018254..1018493 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  EL139_RS05325 (NCTC6181_01087) - 1018626..1019285 (-) 660 WP_111717551.1 DUF1129 domain-containing protein -
  EL139_RS05330 (NCTC6181_01088) - 1019417..1020361 (-) 945 WP_111717550.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=1121224 EL139_RS05315 WP_002993238.1 1017644..1018135(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1121224 EL139_RS05315 WP_002993238.1 1017644..1018135(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACTTTCACACTTGCTGTTAACCGTACCTTTAAAAGTCAAAATGGTGAACGCGAGGCAGATTTTATTAACTGTGTGATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGATTTAACAATAACACTTCATCATCGAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCAATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment