Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VV93_RS03275 Genome accession   NZ_CP009261
Coordinates   694322..695047 (-) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain 93U204     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 689322..700047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS03250 (VV93_v1c06430) sltY 689353..691308 (+) 1956 WP_039552765.1 murein transglycosylase -
  VV93_RS03255 (VV93_v1c06440) trpR 691324..691632 (+) 309 WP_011078578.1 trp operon repressor -
  VV93_RS03260 (VV93_v1c06450) yjjX 691663..692199 (-) 537 WP_039552773.1 inosine/xanthosine triphosphatase -
  VV93_RS03265 (VV93_v1c06460) pheA 692224..693402 (-) 1179 WP_011078576.1 prephenate dehydratase -
  VV93_RS03270 (VV93_v1c06470) hpf 693646..693969 (-) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VV93_RS03275 (VV93_v1c06480) comL 694322..695047 (-) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  VV93_RS03280 (VV93_v1c06490) rluD 695184..696161 (+) 978 WP_039552777.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VV93_RS03285 (VV93_v1c06500) pgeF 696165..696881 (+) 717 WP_181392205.1 peptidoglycan editing factor PgeF -
  VV93_RS03290 (VV93_v1c06510) clpC 696999..699572 (+) 2574 WP_039552781.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=112096 VV93_RS03275 WP_011078574.1 694322..695047(-) (comL) [Vibrio vulnificus strain 93U204]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=112096 VV93_RS03275 WP_011078574.1 694322..695047(-) (comL) [Vibrio vulnificus strain 93U204]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACAGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACACGAGAAAATGGACTGGGTGTT
GTACATGCGTGGTCTCACCCACATGGCACAAGATCGTAATTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACTGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39

Multiple sequence alignment