Detailed information NTG0112097

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VV93_RS03290
• Genome accession: NZ_CP009261
• Coordinates: 696999..699572 (+)
• Length: 857 a.a.
• NCBI ID: WP_039552781.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 93U204
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 691999..704572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV93_RS03265 (VV93_v1c06460)	pheA	692224..693402 (-)	1179	WP_011078576.1	prephenate dehydratase	-
VV93_RS03270 (VV93_v1c06470)	hpf	693646..693969 (-)	324	WP_011078575.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
VV93_RS03275 (VV93_v1c06480)	comL	694322..695047 (-)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
VV93_RS03280 (VV93_v1c06490)	rluD	695184..696161 (+)	978	WP_039552777.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
VV93_RS03285 (VV93_v1c06500)	pgeF	696165..696881 (+)	717	WP_181392205.1	peptidoglycan editing factor PgeF	-
VV93_RS03290 (VV93_v1c06510)	clpC	696999..699572 (+)	2574	WP_039552781.1	ATP-dependent chaperone ClpB	Regulator

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96099.99 Da
• Isoelectric Point: 5.2933

>NTDB_id=112097 VV93_RS03290 WP_039552781.1 696999..699572(+) (clpC) [Vibrio vulnificus strain 93U204]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLATFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQSIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYQLEVSDKAL
ELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=112097 VV93_RS03290 WP_039552781.1 696999..699572(+) (clpC) [Vibrio vulnificus strain 93U204]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAACGGCAGCCCTATTCGTCCACTGCTGACCATCTTAA
ATGTGGATGTAACTCACCTGCGTTCAAAACTCAGCGAAATGTTGGATCGCTTACCCAAAGTGAGCGGTATTGGTGGTGAT
GTACAGCTTTCCTCAGCCATGGGCGCGATGTTTAACTTGTGCGATAAGATTGCACAAAAACGCCAAGATGCTTACATCTC
ATCTGAAATCTTTTTGCTCGCAGCAATCGAAGATAGAGGACCACTTGGCCAGCTCTTCAAAGAACTTGGCTTAACTGAAC
AGAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGTGCAGAACAGGGCAAACTTGACCCTGTGATTGGACGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAGCGTCGAACCAAAAACAACCCCGTGATCATTGGTGAGCCAGGTGTTGGTAAAACCG
CCATTGTTGAAGGTTTAGCACAACGTATCATCAATAACGAGGTGCCCGAAGGTCTGCGTGGTCGCCGAGTATTGTCACTC
GATATGGGCGCGTTGGTGGCTGGAGCGAAGTACCGTGGTGAATTTGAAGAGCGACTTAAATCGGTATTGAATGAGTTGTC
TAAAGAAGAAGGCAATATCATCCTCTTTATTGATGAGCTTCATACCATGGTTGGCGCCGGTAAAGGTGAAGGGTCGATGG
ATGCGGGCAATATGCTCAAACCCGCATTGGCACGTGGTGAGTTACATTGTGTGGGTGCAACGACACTTGATGAGTATCGT
CAGTATATCGAGAAAGATCCGGCACTTGAGCGCCGCTTCCAAAAAGTGCTGGTTGATGAACCAACAGTGGAAGACACCAT
TGCAATTTTGCGTGGTTTAAAAGAACGCTATGAGCTGCATCATCATGTTGAAATTACCGATCCAGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCGGACAAAGCGATCGACCTCATCGACGAAGCCGCATCCAGT
ATTCGCATGCAGATCGATTCTAAACCCGAAGCTCTGGATAAGTTGGAGCGCAAAATCATCCAACTCAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCGAGTGAAAAACGTCTGCGCTCACTTAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCAGAAAAAGCCGCTCTGTCTGGCACTCAGCATATTAAAGCGGCGTTAGAG
CAAGCGCGCATGGATATGGAGTTTGCAAGACGAGCGGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGCCGTATTCC
AGAGCTTGAGAAGCAACTTGACCTAGCAACGCAAGCAGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCTAAGCAAACGGGCATTCCTGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAGCTGCTT
CGCATGGAAGAGGTGCTACATAAACGTGTCATTGGCCAAAAAGAGGCGGTGGAAGTGGTCTCTAATGCGATACGCCGAAG
CCGAGCTGGCTTGTCTGATCCCAATAAACCGATTGGTTCCTTCTTATTCTTAGGTCCAACCGGCGTGGGGAAAACGGAAC
TGTGCAAGACATTGGCGACCTTCATGTTCGACAGTGAAGATGCCATGGTGCGTATCGACATGTCCGAGTTTATGGAAAAA
CACTCAGTGGCACGCTTAGTCGGTGCACCTCCTGGCTATGTGGGTTATGAAGAAGGTGGTTACTTAACGGAAGCCGTTCG
ACGTAAGCCTTATTCAGTGATTTTGCTCGACGAGGTGGAAAAGGCGCATCCTGATGTGTTCAACATCCTGCTGCAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACAGTGGATTTCCGCAATACCGTGGTCATCATGACATCAAACCTA
GGCTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAAGCATCAAAGAACAGGTGATGGAAGTGGTGACCAA
GCACTTCAGGCCGGAGTTTTTGAACCGTGTTGATGAGACAGTCGTCTTCCACCCACTTGGTCAAGACCATATTAAGTCGA
TCGCAGCGATTCAACTTAACCGCTTGGCGAATCGCATGGAAGAGCATGGCTATCAGTTGGAAGTGTCCGATAAAGCGCTT
GAATTGATCGCACAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAGAA
CCCACTGGCGAAATCTATTTTGGCGGGCTCGGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• AAA lid domain (AAA_lid_9) (342-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.713	100	0.473
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.657	100	0.417
clpE	Streptococcus pneumoniae R6	47.941	79.347	0.38
clpE	Streptococcus pneumoniae D39	47.941	79.347	0.38
clpE	Streptococcus pneumoniae Rx1	47.941	79.347	0.38
clpE	Streptococcus mutans UA159	47.865	79.23	0.379
clpC	Lactococcus lactis subsp. cremoris KW2	46.098	80.747	0.372